Mia Huddleston Week 5
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Electronic Lab Notebook
See Week 5 Annotated Bibliography for this week's assignment.
Research Project Outline
The basic processes that Anu and I will be using to complete our research project:
- Goal: To create a correlation rather than three groupings of analysis between CD4 T cell counts and genetic diversity
- S and theta values will be calculated for each visit for each subject and compared with their CD4 T cell count of that visit
- We will team up with Will Fuchs and Colin Wikholm in order to calculate all of these as they will need the same data for their project.
- A graph can also be calculated using these numbers vs. each visit
- Graphs will also be created comparing S and theta values versus CD4 T cell counts
- A few phylogenic trees will be created as well
- Then, we will use a regression curve to find the answer to our hypothesis
References
- Websites used:
- Articles Used:
- Markham, R. B., Wang, W.-C., Weisstein, A. E., Wang, Z., Munoz, A., Templeton, A., … Yu, X.-F. (1998). Patterns of HIV-1 evolution in individuals with differing rates of CD4 T cell decline. Proceedings of the National Academy of Sciences of the United States of America, 95(21), 12568–12573.
- Other
Acknowledgments
This work was done with help from my homework partner, Anu in class and with the help of our professor; Dr. Dahlquist. Anu and I met in class to determine the outline of our research project. While I worked with the people noted above, this individual journal entry was completed by me and not copied from another source. Mia Huddleston 16:50, 3 October 2016 (EDT)
Useful links
User Page: Mia Huddleston
Bioinfomatics Lab: Fall 2016
Class Page: Bioinfomatics Laboratory, Fall 2016
