Harvard:Biophysics 101/2007

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Biophysics 101: Genomics, Computing, and Economics

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Course overview

Focuses on modern technologies with exponential growth and their impact on global quality of life through weekly updated Wiki class project (in-depth case studies on personal genomics and/or biofuels). Integrating knowledge, tools for research, and commercial decision-making concerning new aspects of bioengineering, personalized medicine, genetically modified organisms, and stem cells. Interplays of biophysical, ecological, economic, and social/ethical modeling will be explored through multi-disciplinary teams of students, and individual brief reports.

Potential course projects

Earth 2.0

  • Analytic: Bioweather map. Collection and use of real-time assays to track virus outbreaks, etc.
  • Synthetic: Bioenergy. Integrated metabolic, genetic, economic, process, environmental modeling.

H. sapiens 2.0

Logistics

  • Meeting time: Tuesdays and Thursdays, 10:00—11:30 am
  • First class Thu 1-Feb-2007.
  • Location: Barker Center, Room 316
  • No exams
  • No prerequisites
  • Grading
    • 25% Participation
    • 25% Personal wiki page (weekly assignments)
    • 50% Contribution to group project

Background Info and previous class projects

Recent changes

List of abbreviations:
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27 February 2020

     00:02  BIOL368/S20:Class Journal Week 6‎‎ 2 changes history +1,842 [Sahil Patel‎; Kvescio‎]
     
00:02 (cur | prev) -1 Kvescio talk contribs →‎Karina Vescio: edit.
     
00:02 (cur | prev) +1,843 Sahil Patel talk contribs Class journal
     00:01  Non: Week 6‎‎ 2 changes history +577 [Non‎ (2×)]
     
00:01 (cur | prev) +83 Non talk contribs →‎Scientific Conclusion
     
00:00 (cur | prev) +494 Non talk contribs →‎Acknowledgements: added acknowledgments
     00:00  Kvescio Week 6 Assignment diffhist +130 Kvescio talk contribs →‎Data and Files: added file

26 February 2020

     23:59  Dcartmel Week 6‎‎ 4 changes history +459 [Dcartmel‎ (4×)]
     
23:59 (cur | prev) +1 Dcartmel talk contribs punctuation
     
23:55 (cur | prev) +350 Dcartmel talk contribs →‎Scientific Conclusion: added to conclusion
     
23:44 (cur | prev) +366 Dcartmel talk contribs →‎References: added reference to original paper
     
23:39 (cur | prev) -258 Dcartmel talk contribs →‎Combined Methods/Results: added link to presentation
     23:59  Carolyne week 6‎‎ 8 changes history +3,313 [Carolyne‎ (8×)]
     
23:59 (cur | prev) -2 Carolyne talk contribs →‎Part 1: Sequence Alignment and Phylogenetic Tree Creation
     
23:58 (cur | prev) +67 Carolyne talk contribs →‎Data and Files: added presentation file
     
23:55 (cur | prev) +480 Carolyne talk contribs added question and hypothesis
     
23:51 (cur | prev) +238 Carolyne talk contribs →‎References: added references
     
23:51 (cur | prev) +156 Carolyne talk contribs →‎References: added references
     
23:49 (cur | prev) +1,299 Carolyne talk contribs →‎Discussion and Conclusion: added discussion and conclusion
     
23:37 (cur | prev) +569 Carolyne talk contribs →‎Part 2: Sequence Analysis: added more notes on methods used in this project
     
23:32 (cur | prev) +506 Carolyne talk contribs →‎Sequence Alignment Results Graph for Hotspot #1: added consensus sequence bar graphs
     23:58  Non: Week 6‎‎ 5 changes history +2,615 [Non‎ (5×)]
     
23:58 (cur | prev) +1 Non talk contribs formatting
     
23:57 (cur | prev) +659 Non talk contribs →‎References: added references
     
23:53 (cur | prev) +57 Non talk contribs →‎Data/Files: formatting
     
23:50 (cur | prev) +292 Non talk contribs →‎Data/Files: added files
     
23:44 (cur | prev) +1,606 Non talk contribs →‎Combined Methods/Results: added methods, results
     23:57  (Upload log) [Dcartmel‎; Cdominguez‎; Carolyne‎; Sahil Patel‎ (2×); Non‎ (2×)]
     
23:57 Carolyne talk contribs uploaded File:Egekeze On Nucleotide changes in V3 region (1).pptx.zip(Presentation slides for week 7)
     
23:48 Non talk contribs uploaded File:Non sequence analysis.zip(Excel sequence analysis)
     
23:46 Non talk contribs uploaded File:Non cegekeze final bioinformatics presentation.zip(Final bioinformatics powerpoint presentation)
     
23:46 Cdominguez talk contribs uploaded File:CDADPresentation .pdf
     
23:41 Sahil Patel talk contribs uploaded File:Classified data summary.xlsx.zip
     
23:36 Sahil Patel talk contribs uploaded File:Change in CD4 T-Cell count and HIV evolution from first to last visit in injection drug users.pdf
     
23:35 Dcartmel talk contribs uploaded File:Bioinformatics Presentation 1.pdf(Drew and Jack Presentation)
     23:56  Jmenzago Week 6‎‎ 6 changes history +487 [Jmenzago‎ (6×)]
     
23:56 (cur | prev) +206 Jmenzago talk contribs →‎Acknowledgements: added statement "Except for what is noted above..." and signature
     
23:55 (cur | prev) +81 Jmenzago talk contribs →‎Methods/Results: added research presentation
     
23:54 (cur | prev) +35 Jmenzago talk contribs →‎Comparison of Sequences: added how graphs were generated
     
23:44 (cur | prev) +249 Jmenzago talk contribs →‎Comparison of Sequences: added analysis of graph results
     
23:39 (cur | prev) -47 Jmenzago talk contribs →‎Scientific Conclusion: added result about window 11
     
23:37 (cur | prev) -37 Jmenzago talk contribs →‎Scientific Conclusion: added future direction
     23:56  Kvescio Week 6 Assignment‎‎ 2 changes history +335 [Kvescio‎ (2×)]
     
23:56 (cur | prev) -1 Kvescio talk contribs →‎References: edited format
     
23:56 (cur | prev) +336 Kvescio talk contribs →‎References: added reference
     23:54  BIOL368/S20:Class Journal Week 6‎‎ 2 changes history +1,643 [Non‎; Lurbinah‎]
     
23:54 (cur | prev) +1,643 Lurbinah talk contribs added Lizzy Urbina
     
23:36 (cur | prev) 0 Non talk contribs →‎Nathan On: signature
     23:49  BIOL368/S20:Sahil Patel Week 6‎‎ 8 changes history +1,345 [Sahil Patel‎ (8×)]
     
23:49 (cur | prev) +209 Sahil Patel talk contribs Question
     
23:47 (cur | prev) +560 Sahil Patel talk contribs Resources
     
23:45 (cur | prev) +359 Sahil Patel talk contribs acknowledgments
     
23:42 (cur | prev) +3 Sahil Patel talk contribs bullets
     
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23:36 (cur | prev) +46 Sahil Patel talk contribs purpose
     23:46  Cdominguez Week 6‎‎ 2 changes history +62 [Cdominguez‎ (2×)]
     
23:46 (cur | prev) +16 Cdominguez talk contribs →‎Data and Files: add pdf presentation
     
23:44 (cur | prev) +46 Cdominguez talk contribs →‎Data and Files: presentation section
     23:39  Lurbinah Week 6 diffhist +1,520 Lurbinah talk contribs added References and Aknowledgement