Harvard:Biophysics 101/2007

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Biophysics 101: Genomics, Computing, and Economics

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Course overview

Focuses on modern technologies with exponential growth and their impact on global quality of life through weekly updated Wiki class project (in-depth case studies on personal genomics and/or biofuels). Integrating knowledge, tools for research, and commercial decision-making concerning new aspects of bioengineering, personalized medicine, genetically modified organisms, and stem cells. Interplays of biophysical, ecological, economic, and social/ethical modeling will be explored through multi-disciplinary teams of students, and individual brief reports.

Potential course projects

Earth 2.0

  • Analytic: Bioweather map. Collection and use of real-time assays to track virus outbreaks, etc.
  • Synthetic: Bioenergy. Integrated metabolic, genetic, economic, process, environmental modeling.

H. sapiens 2.0

Logistics

  • Meeting time: Tuesdays and Thursdays, 10:00—11:30 am
  • First class Thu 1-Feb-2007.
  • Location: Barker Center, Room 316
  • No exams
  • No prerequisites
  • Grading
    • 25% Participation
    • 25% Personal wiki page (weekly assignments)
    • 50% Contribution to group project

Background Info and previous class projects

Recent changes

List of abbreviations:
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26 October 2020

     17:33  TMPRSS2 Lab Notebook‎‎ 12 changes history +1,313 [Adinulos‎; Mking44‎ (11×)]
     
17:33 (cur | prev) +152 Mking44 talk contribs →‎Exon 14: added description
     
17:26 (cur | prev) +85 Mking44 talk contribs →‎Exon 13: updated
     
17:24 (cur | prev) +60 Mking44 talk contribs →‎Exon 12: modified to include missense
     
17:18 (cur | prev) +128 Mking44 talk contribs →‎Exon 14: added exon 14
     
17:14 (cur | prev) +1 Mking44 talk contribs →‎Exon 13: fixed formatting
     
17:14 (cur | prev) +141 Mking44 talk contribs →‎Exon 13: added exon 13
     
17:11 (cur | prev) +140 Mking44 talk contribs →‎Exon 12: added exon 12
     
17:05 (cur | prev) -15 Mking44 talk contribs →‎Exon SNPs: editted formatting
     
16:50 (cur | prev) +183 Mking44 talk contribs →‎Exon SNPs: added more to description
     
16:30 (cur | prev) -1 Mking44 talk contribs →‎Exon SNPs: fixed formatting
     
16:29 (cur | prev) +208 Mking44 talk contribs →‎Exon SNPs: added description
     
11:55 (cur | prev) +231 Adinulos talk contribs added exon headings
     17:25  (Upload log) [Mking44‎ (5×)]
     
17:25 Mking44 talk contribs uploaded File:Exon 13 TMPRSS2 Madeleine King updated.PNG
     
17:22 Mking44 talk contribs uploaded a new version of File:Exon 12 TMPRSS2 Madeleine King.PNG
     
17:17 Mking44 talk contribs uploaded File:Exon 14 TMPRSS2 Madeleine King.PNG
     
17:12 Mking44 talk contribs uploaded File:Exon 13 TMPRSS2 Madeleine King.PNG
     
17:09 Mking44 talk contribs uploaded File:Exon 12 TMPRSS2 Madeleine King.PNG
     15:09  Lee:Publications diffhist +10 Wooin Lee talk contribs →‎2020
 m   10:52  User:Korey Griffin diffhist +43 Korey Griffin talk contribs →‎Empirical

25 October 2020

     19:20  Gao lab:Research diffhist +20 Gaoweiping talk contribs →‎Research Areas
     18:03  User:Gareth Trubl‎‎ 2 changes history +350 [Gtrubl‎ (2×)]
     
18:03 (cur | prev) +341 Gtrubl talk contribs
     
17:48 (cur | prev) +9 Gtrubl talk contribs
     15:11  BacFITBase Review‎‎ 16 changes history +6,167 [Owen R. Dailey‎ (16×)]
     
15:11 (cur | prev) +192 Owen R. Dailey talk contribs →‎Summary judgment: Added answer to question 2
     
15:07 (cur | prev) +47 Owen R. Dailey talk contribs →‎General utility of the database to the scientific community: Minor edit
     
15:06 (cur | prev) +218 Owen R. Dailey talk contribs →‎General utility of the database to the scientific community: Added answer to question 5
     
15:03 (cur | prev) +433 Owen R. Dailey talk contribs →‎General utility of the database to the scientific community: Added answer to question 3
     
14:47 (cur | prev) +174 Owen R. Dailey talk contribs →‎General utility of the database to the scientific community: Added answer for question 1
     
14:42 (cur | prev) +5 Owen R. Dailey talk contribs →‎General utility of the database to the scientific community: Added answer to question 1
     
14:40 (cur | prev) +1,355 Owen R. Dailey talk contribs →‎Scientific quality of the database: Added answer to question 4
     
14:23 (cur | prev) +888 Owen R. Dailey talk contribs →‎Scientific quality of the database: Added links for question two
     
14:07 (cur | prev) +1,424 Owen R. Dailey talk contribs →‎Scientific quality of the database: Added answer to question 2
     
13:19 (cur | prev) -15 Owen R. Dailey talk contribs →‎Database Evaluation: Re-formatted questions
     
13:18 (cur | prev) -12 Owen R. Dailey talk contribs →‎Scientific quality of the database: Re-formatted questions
     
13:15 (cur | prev) +470 Owen R. Dailey talk contribs →‎General information about the database: Edited question 2 and answered question 4
     
13:07 (cur | prev) +1,162 Owen R. Dailey talk contribs →‎General information about the database: Added the answer for question 2
     
12:30 (cur | prev) -12 Owen R. Dailey talk contribs →‎General information about the database: Re-formatted
     
12:29 (cur | prev) -413 Owen R. Dailey talk contribs →‎Methods/Results: Added first methods and re-arranged format
     
12:18 (cur | prev) +251 Owen R. Dailey talk contribs →‎Purpose: Added purpose
     01:37  Theobaldtwang:Publications&patents diffhist +1 Theobald, Tianwen Wang talk contribs

24 October 2020

22 October 2020

     21:55  FoldamerDB Review‎‎ 3 changes history +449 [Aiden Burnett‎ (3×)]
     
21:55 (cur | prev) +50 Aiden Burnett talk contribs →‎General information about the database: wrote database name
     
21:54 (cur | prev) +407 Aiden Burnett talk contribs →‎General utility of the database to the scientific community: wrote answers
     
15:54 (cur | prev) -8 Aiden Burnett talk contribs →‎Database Evaluation: added subheadings
     20:23 Deletion log Yar talk contribs deleted page File:Daniel Wuttke.jpg(User request)
     15:55  BacFITBase Review diffhist +84 Owen R. Dailey talk contribs Added headers
     15:54  Yaniv Maddahi Journal Week 8‎‎ 3 changes history +483 [Yaniv Maddahi‎ (3×)]
     
15:54 (cur | prev) +316 Yaniv Maddahi talk contribs →‎General information about the database: added curation answers
     
15:49 (cur | prev) 0 Yaniv Maddahi talk contribs →‎General information about the database: fixed quick link
     
15:49 (cur | prev) +167 Yaniv Maddahi talk contribs →‎General information about the database: added meta data
     15:48  Therapeutic Target Database (TTD) Review diffhist +3 Macie Duran talk contribs →‎General information about the database: edit bullet formatting
N    15:47  Nathan R Beshai Week 8 diffhist +1,480 Nathan R. Beshai talk contribs added website variety