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- 08:13, 19 September 2018 RG 2018/09/19 (hist) [429 bytes] Rachel Gill (talk | contribs) (Created page with "==Objective== Learn how to set the syringe pump EW-75900-50 from Cole-Parmer. ==Lab Protocol== <u>Cole-Parmer Settings</u> * diameter - 9.17 mm * volume - 3.00 mL * rate - 1...")
- 07:19, 19 September 2018 RG 2018/09/14 (hist) [522 bytes] Rachel Gill (talk | contribs) (Created page with "==Objective== To create a prototype for the syringe set up to create the clay/polymer beads. ==Lab Protocol== <u>Materials<u/> * tygon tubing, inner diameter 1/32 " * PEEK tu...")
- 10:23, 13 September 2018 September 13, 2018 (hist) [2,361 bytes] HolyRomulus (talk | contribs) (Creating page for daily lab notes from September 13)
- 18:47, 11 September 2018 RG 2018/09/07 (hist) [2,263 bytes] Rachel Gill (talk | contribs) (Created page with "==Objective== Create ICP standard solutions in concentrations of 250 ppb, 500 ppb, 1 ppm 2 ppm, 4 ppm, 6 ppm, 8 ppm, and 10 ppm for ICP measurements. ==Lab Protocol== <u>ICP...")
- 18:07, 11 September 2018 RG 2018/09/05 (hist) [2,045 bytes] Rachel Gill (talk | contribs) (Created page with "==Objective== To measure Malachite green solutions made on 2018/08/31 with fluorescence spectroscopy. Also make two new solutions that are closer to range of UV-...")
- 17:53, 11 September 2018 RG page1 (hist) [1,953 bytes] Rachel Gill (talk | contribs) (Created page with "==Objective== Create new solutions of Malachite Green dye of varying concentrations. Measure the absorbance of the solutions with UV-Vis. ==Lab Protocol== # Create two new so...")
- 11:23, 6 September 2018 BeauchampLab:VibrationMatlabCode (hist) [2,302 bytes] Meghanr (talk | contribs) (Created page with " % MATLAB code for finding best fit. As before, you could probably find a more elegant way to do this. Or, you could copy and paste and move on with your day. ;-) % R =...")
- 10:24, 6 September 2018 Beauchamp:VibrationArtifacts (hist) [9,509 bytes] Meghanr (talk | contribs) (Created page with "{{Beauchamp Navigation Bar}} <br> <div style="padding: 8px; color: #000000; background-color: #ffffff; width: 730px; border: 2px solid #666666;"> = Vibration Artifacts in DTI...")
- 07:01, 5 September 2018 UA Biophysics:Protocols:M9 plates (hist) [516 bytes] Elizabeth Suesca (talk | contribs) (Created page with "'''M9 plates (20 plates with 20 ml each one)''' #First step: Mix *M9 salts 5x 80ml *Agar 6g *MilliQ 240 ml '''Autoclave and cool to 50C''' #Second step: Add to the first ste...")
- 16:28, 4 September 2018 Peyton:Lab Meeting Schedule Fall 2018 (hist) [1,069 bytes] Speyton (talk | contribs) (Created page with "{{Peyton Top}} {| |- valign="top" |width=740px class="MainPageBG" style="border: 5px solid #330000; color: #000000; background-color: #FFFFFF"| <div style="padding: .4em .9e...")
- 09:22, 31 August 2018 Kartzinel:Lab Meetings (hist) [832 bytes] Tyler R. Kartzinel (talk | contribs) (Created page with "Lab meetings are weekly, Fri 3-? pm in IBES 110. Grad students and postdocs, please sign up for a 20-30 min presentation either of your own material or of a paper you finding...")
- 14:55, 27 August 2018 The Essential Unknowns/About (hist) [5,482 bytes] Gasparek (talk | contribs) (Created page with "=Essential unknowns= '''The essential unknown genes''' (also referred to as the ''essential unknowns'') in the context of the minimal cell, are the genes that must be present...")
- 18:16, 20 August 2018 TX-TL Reaction Mix Example (hist) [1,139 bytes] Wpoole (talk | contribs) (Created page with "The following is an example TX-TL reaction following the standard used by the Murray Lab at Caltech. In general, the salt concentrations for each batch of TX-TL are calibrated...")
- 08:15, 15 August 2018 Peyton:Polio et al., Lung biomechanics (hist) [1,841 bytes] Speyton (talk | contribs) (Created page with "{{Peyton Top}} {| |- valign="top" |width=740px class="MainPageBG" style="border: 5px solid #330000; color: #000000; background-color: #FFFFFF"| <div style="padding: .4em .9e...")
- 19:50, 13 August 2018 BuildACell\CellFree\DataRepository (hist) [1,132 bytes] Wpoole (talk | contribs) (Created page with "{| Experiment Title | Contributor (with email) | Experiment Date | Extract Type and Organism (eg E. Coli S30, PURE) | Energy Solution Type or Identifier | Brief Comments on Ex...")
- 19:34, 13 August 2018 BuildACell\CellFree\Protocols (hist) [552 bytes] Wpoole (talk | contribs) (Created page with "S30 Extract Preparation: The following protocol is an slightly optimized version of the [https://www.jove.com/video/50762/protocols-for-implementing-an-escherichia-coli-based-...")
- 19:26, 13 August 2018 BuildACell/CellFree (hist) [783 bytes] Wpoole (talk | contribs) (Created page with "This is the top level page for protocols, data, and unknowns related to cell free systems such as cell extracts (TXTL) and PURE systems in the Build-A-Cell project. In particu...")
- 19:22, 13 August 2018 BuildACell/InSilicoCell (hist) [499 bytes] Wpoole (talk | contribs) (Created page with "This is the top level page for models, simulations, and systems level analysis in the Build-A-Cell project. The main goal of this page is to unify different modelling framewor...")
- 12:54, 8 August 2018 BuildACell (hist) [356 bytes] Anton Jackson-Smith (talk | contribs) (Created page with "Welcome to the Build A Cell project. For general information, please see [http://buildacell.io]. This wiki serves as a forum for open and rapid communication and collaboratio...")
- 19:41, 7 August 2018 Hoatlin:con606 pmcb 2018 how the class works (hist) [6,950 bytes] Maureen E. Hoatlin (talk | contribs) (Created page with "{{Template:CONJ606.PMCB2018}} ==Course Reading Material== #General Background reading, for example: Alberts et al., "Molecular Biology of the Cell" #Reviews and research arti...")
- 13:40, 6 August 2018 HoatlinCONJ606:Discussion 2018 (hist) [59 bytes] Maureen E. Hoatlin (talk | contribs) (Created page with "{{Template:CONJ606.PMCB2018}} ==Student Discussion Pages==")
- 13:38, 6 August 2018 HoatlinCONJ606:Help 2018 (hist) [1,588 bytes] Maureen E. Hoatlin (talk | contribs) (Created page with "==Open Science Guidelines for posting materials== ==Links for wiki markup== Some pages designed to help students become familiar with OpenWetWare. OpenWetWare:How_to_join...")
- 13:36, 6 August 2018 HoatlinCONJ606:Schedule 2018 (hist) [4,094 bytes] Maureen E. Hoatlin (talk | contribs) (Created page with "{{Template:CONJ606.PMCB2018}} ==General Info== *Fall 2018 *Location: [http://www.ohsu.edu | Oregon Health and Science University], main campus, *Tuesdays practice and review...")
- 13:27, 6 August 2018 The Essential Unknowns/Protocols (hist) [375 bytes] Koeng (talk | contribs) (Created page with " == Protocols for expressing genes == == PPI protocols ==")
- 13:14, 6 August 2018 The Essential Unknowns/Getting started (hist) [155 bytes] Anton Jackson-Smith (talk | contribs) (Created page with "= What you can find here = = How you can use it = = Teach me = == Biology for modeling == * Things to read * What to look for == Modeling for biology ==")
- 13:13, 6 August 2018 The Essential Unknowns/Papers (hist) [201 bytes] Koeng (talk | contribs) (Created page with "[http://science.sciencemag.org/content/351/6280/aad6253 Design and synthesis of a minimal bacterial genome]")
- 13:07, 6 August 2018 The Essential Unknowns/Ideas (hist) [196 bytes] Koeng (talk | contribs) (Created page with " = Modeling = = Biochemistry = * Measure enzymatic constants of all JCVI-Syn3 known genes. = Synbio = = Software = = Citizenship = * Create a 'getting started' gui...")
- 13:00, 6 August 2018 Endy:Jobs (hist) [606 bytes] Alec Lourenco (talk | contribs) (Created page with "List of Lab Duties (prelim) - Refill water in water bath next to the plate readers.")
- 12:46, 6 August 2018 HoatlinCONJ606:Materials 2018 (hist) [851 bytes] Maureen E. Hoatlin (talk | contribs) (Created page with "{{Template:CONJ606.PMCB2018}} ==Class Focus, Fall 2018== # #Genomic instability # # == Organizational Meeting: Introduction and Scheduling== ===Evaluation Forms=== *Med...")
- 12:40, 6 August 2018 CONJ606:People 2018 (hist) [1,290 bytes] Maureen E. Hoatlin (talk | contribs) (Created page with "{{Template:CONJ606.PMCB2018}} ==Instructors== *Director-[http://www.ohsu.edu/xd/education/schools/school-of-medicine/departments/basic-science-departments/biochemistry-molecu...")
- 12:17, 6 August 2018 CONJ606 2018:People (hist) [1,152 bytes] Maureen E. Hoatlin (talk | contribs) (Created page with "{{Template:CONJ606.PMCB2018}} ==Instructors== *Director-[http://www.ohsu.edu/xd/education/schools/school-of-medicine/departments/basic-science-departments/biochemistry-molecu...")
- 10:31, 6 August 2018 The Essential Unknowns/Example Gene (hist) [1,292 bytes] Koeng (talk | contribs) (Created page with "= JCVISYN3A_0001 = * gene: dnaA * locus_tag: JCVISYN3A_0001 * product: Chromosomal replication initiator protein == Human Description == == Data == == Links == === Specif...")
- 08:37, 6 August 2018 Beauchamp:BrainPix (hist) [772 bytes] Meghanr (talk | contribs) (Created page with "{{Beauchamp Navigation Bar}} <br> <div style="padding: 8px; color: #000000; background-color: #ffffff; width: 730px; border: 2px solid #666666;"> = Introduction = Sometimes...")
- 18:36, 5 August 2018 Preparation of cell-sized water-in-oil droplets (hist) [5,249 bytes] Gasparek (talk | contribs) (Created page with "==Procedure== '''PREPARATION OF LIPID DRY FILM''' # Dissolve POPC in chlorofom to a final concentration of 65mM (*use total 100mg of lipids*) in a glass vial. # Discard super...")
- 13:49, 1 August 2018 Hoatlin:BMB seminar series 2018-2019 (hist) [9,581 bytes] Maureen E. Hoatlin (talk | contribs) (BMB and Combined Seminar series 2018-2019)
- 12:08, 24 July 2018 Hoatlin:CON606/PMCB 2018 (hist) [2,187 bytes] Maureen E. Hoatlin (talk | contribs) (Created page with "{{Template:CONJ606.PMCB}} <div style="padding: 15px; width: 710px; border: 5px solid #B3CD4E;"> <div style="padding: 1px; width: 700px; border: 3px solid #DDDDFF;"> <div sty...")
- 14:24, 19 July 2018 UA Biophysics:Protocols: Multilamellar Vesicles (hist) [440 bytes] Elizabeth Suesca (talk | contribs) (Created page with "'''Multilamellar Vesicles''' The dried lipid, prepared as described in "liposome stock", is hydrated using a hydration buffer. #Preheat the buffer at a temperature approxima...")
- 09:03, 19 July 2018 UA Biophysics:Protocols: Lipid stock (hist) [870 bytes] Elizabeth Suesca (talk | contribs) (Created page with "'''Lipid stock''' #Lipids from the company are stored to -80°C for ensure stability #Prior to weighting, lipids should be brought to room temperature in a container containin...")
- 13:26, 18 July 2018 UA Biophysics:Protocols:NOH (hist) [520 bytes] Elizabeth Suesca (talk | contribs) (Created page with "==NOH 10M== #Weigh 39.997 g of NOH into a small beaker, or glass container. #Slowly add the KOH in cool deionized water, while it is dissolve by shaking. Rinse the glass con...")
- 13:16, 18 July 2018 UA Biophysics:Protocols:KOH (hist) [518 bytes] Elizabeth Suesca (talk | contribs) (Created page with "==PROTOCOL FOR 1l/ 1M == #Weigh 56.1056 g of KOH into a small beaker, or glass container. #Slowly add the KOH in cool deionized water, while it is dissolve by shaking. Rinse...")
