Registry of Standard Biological Models

From OpenWetWare
Jump to navigationJump to search
A collection of models of biological parts that can be freely reused and composed with each other to produce more complex models. A draft implementation of the registry is underway and collaborators are being sought.
Talk to us at - BioSysBio 2007, SB3.0, and iGEM Jamboree Workshop 2007
Goals
  • To contribute to the Open Source Synthetic Biology effort.
  • To store, curate and support models related to physical Biobricks.
  • To drive and guide the experimental characterization of BioBricks.
  • To enable the reuse of modular part models.
  • To provide a forum for modelers to contribute to the BioBricks effort.
Activities
  • Planning the architecture of a registry of standard biological models.
  • Building a collection of standard biological models.
  • Define a modeling description language that is:
    • Machine readable
    • Capable of describing gene expression networks
    • Modular (standardized defined inputs/ouputs)
    • Hierarchical (models are composable)
    • Capable of describing models that can be related to experimental data.

Recent edits:
List of abbreviations:
N
This edit created a new page (also see list of new pages)
m
This is a minor edit
b
This edit was performed by a bot
(±123)
The page size changed by this number of bytes

29 January 2023

     02:27 User creation log User account Shebert talk contribs was created by Yar talk contribs and password was sent by email ‎

28 January 2023

     16:56  BioMicroCenter‎‎ 3 changes history −83 [Stuart S. Levine‎ (3×)]
     
16:56 (cur | prev) +17 Stuart S. Levine talk contribs
     
13:32 (cur | prev) −7 Stuart S. Levine talk contribs
     
13:32 (cur | prev) −93 Stuart S. Levine talk contribs
 m   09:34  Todd:Guidelines‎‎ 2 changes history −4,764 [Matthew Todd‎ (2×)]
 m   
09:34 (cur | prev) −1,959 Matthew Todd talk contribs
 m   
09:14 (cur | prev) −2,805 Matthew Todd talk contribs

27 January 2023

     13:42  UA Biophysics:Protocols: LUV diffhist +85 Elizabeth Suesca talk contribs
     13:38  UA Biophysics:Protocols: Multilamellar Vesicles diffhist +340 Elizabeth Suesca talk contribs
     13:37  UA Biophysics:Protocols: Lipid stock‎‎ 2 changes history −200 [Elizabeth Suesca‎ (2×)]
     
13:37 (cur | prev) −1 Elizabeth Suesca talk contribs
     
13:37 (cur | prev) −199 Elizabeth Suesca talk contribs
     11:46  BioMicroCenter:BioinfoClasses‎‎ 4 changes history +794 [Stuart S. Levine‎; Duan Ma‎ (3×)]
     
11:46 (cur | prev) +143 Duan Ma talk contribs
     
11:30 (cur | prev) −1 Duan Ma talk contribs (→‎Classes in spring 2023)
     
09:59 (cur | prev) +614 Duan Ma talk contribs
     
07:47 (cur | prev) +38 Stuart S. Levine talk contribs (→‎Teaching Schedule)
 m   09:38  Griffin:CRISPR diffhist +283 Korey Griffin talk contribs (→‎Cas9 Nickase)
     08:49  BioMicroCenter:Pricing‎‎ 28 changes history −138 [Cdemurjian‎ (28×)]
     
08:49 (cur | prev) −23 Cdemurjian talk contribs (Undo revision 1108410 by Cdemurjian (talk)) Tag: Undo
     
08:49 (cur | prev) −6 Cdemurjian talk contribs (Undo revision 1108458 by Cdemurjian (talk)) Tag: Undo
     
08:49 (cur | prev) −5 Cdemurjian talk contribs (Undo revision 1108459 by Cdemurjian (talk)) Tag: Undo
     
08:49 (cur | prev) −5 Cdemurjian talk contribs (Undo revision 1108460 by Cdemurjian (talk)) Tag: Undo
     
08:48 (cur | prev) −12 Cdemurjian talk contribs (Undo revision 1108461 by Cdemurjian (talk)) Tag: Undo
     
08:48 (cur | prev) 0 Cdemurjian talk contribs (Undo revision 1108462 by Cdemurjian (talk)) Tag: Undo
     
08:45 (cur | prev) 0 Cdemurjian talk contribs (→‎ILLUMINA LIBRARY - DNA)
     
08:44 (cur | prev) +12 Cdemurjian talk contribs (→‎ILLUMINA LIBRARY - DNA)
     
08:42 (cur | prev) +5 Cdemurjian talk contribs (→‎OTHER ILLUMINA SERVICES)
     
08:42 (cur | prev) +5 Cdemurjian talk contribs (→‎NOVASEQ SEQUENCING)
     
08:42 (cur | prev) +6 Cdemurjian talk contribs (→‎NOVASEQ SEQUENCING)
     
07:46 (cur | prev) −1 Cdemurjian talk contribs (Undo revision 1108414 by Cdemurjian (talk)) Tag: Undo
     
07:46 (cur | prev) −2 Cdemurjian talk contribs (Undo revision 1108415 by Cdemurjian (talk)) Tag: Undo
     
07:46 (cur | prev) −6 Cdemurjian talk contribs (Undo revision 1108416 by Cdemurjian (talk)) Tag: Undo
     
07:46 (cur | prev) 0 Cdemurjian talk contribs (Undo revision 1108417 by Cdemurjian (talk)) Tag: Undo
     
07:46 (cur | prev) 0 Cdemurjian talk contribs (Undo revision 1108418 by Cdemurjian (talk)) Tag: Undo
     
07:46 (cur | prev) −6 Cdemurjian talk contribs (Undo revision 1108419 by Cdemurjian (talk)) Tag: Undo
     
07:45 (cur | prev) −13 Cdemurjian talk contribs (Undo revision 1108420 by Cdemurjian (talk)) Tag: Undo
     
07:45 (cur | prev) −16 Cdemurjian talk contribs (Undo revision 1108421 by Cdemurjian (talk)) Tag: Undo
     
07:45 (cur | prev) −11 Cdemurjian talk contribs (Undo revision 1108422 by Cdemurjian (talk)) Tag: Undo
     
07:45 (cur | prev) −5 Cdemurjian talk contribs (Undo revision 1108423 by Cdemurjian (talk)) Tag: Undo
     
07:45 (cur | prev) −14 Cdemurjian talk contribs (Undo revision 1108424 by Cdemurjian (talk)) Tag: Undo
     
07:44 (cur | prev) −30 Cdemurjian talk contribs (Undo revision 1108425 by Cdemurjian (talk)) Tag: Undo
     
07:44 (cur | prev) −2 Cdemurjian talk contribs (Undo revision 1108426 by Cdemurjian (talk)) Tag: Undo
     
07:44 (cur | prev) −2 Cdemurjian talk contribs (Undo revision 1108427 by Cdemurjian (talk)) Tag: Undo
     
07:29 (cur | prev) −3 Cdemurjian talk contribs (Undo revision 1108428 by Cdemurjian (talk)) Tag: Undo
     
07:29 (cur | prev) −4 Cdemurjian talk contribs (Undo revision 1108409 by Cdemurjian (talk)) Tag: Undo
     
07:28 (cur | prev) 0 Cdemurjian talk contribs (Undo revision 1108408 by Cdemurjian (talk)) Tag: Undo
     08:48  BioMicroCenter:PricingFY2023b‎‎ 7 changes history +29 [Cdemurjian‎ (7×)]
     
08:48 (cur | prev) −1 Cdemurjian talk contribs (→‎LONG READ SEQUENCING)
     
08:47 (cur | prev) 0 Cdemurjian talk contribs (→‎NOVASEQ SEQUENCING)
     
07:50 (cur | prev) 0 Cdemurjian talk contribs (→‎MISEQ SEQUENCING)
     
07:40 (cur | prev) +3 Cdemurjian talk contribs (→‎NEXTSEQ500 SEQUENCING)
     
07:26 (cur | prev) +5 Cdemurjian talk contribs (→‎MISEQ SEQUENCING)
     
07:22 (cur | prev) +4 Cdemurjian talk contribs (→‎ILLUMINA LIBRARY - RNA)
     
07:19 (cur | prev) +18 Cdemurjian talk contribs (→‎10X CHROMIUM)

  • See this page for a draft implementation.
  • See this page for a draft on model implementations following CellML 1.1.