Xenopus Community

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Under Construction. Edits and suggestions welcome.

Discussion about having XenWiki on OWW or hosted at [XenBase]

  • XenBase could set up and host a wiki for the Xen Community on its new server, or the XenWiki could be here on OWW. I justed added a few thoughts.

Advantages to hosting XenWiki on OWW

  1. Broader involvement with the non-Xenopus scientific community
  2. Xen Labs will learn about other work going on in OWW labs, esp. Synthetic Biology
  3. OWW has a lab-tweaked mediawiki
  4. very interactive scientists with many interests are managing the OWW site
  5. learning curve for wikitricks (editing, etc) is very good because of all the help and organization on OWW. This will help new XenLabs get wikified.
  6. don't have to cope with administrative and technical overhead of setting up/maintaining the software and hardware to run the wiki
  7. backed up every day -> moving to server with redundant hardware, diesel power backup, multiple server uplinks to internet, 1 hr hardware replacement guarantee, 24hr monitoring... et cetera
  8. it does not hurt to try, and then move your wiki later. As long as you are using mediawiki (by far the largest wiki distribution), you can always move pages later. It really is just copying and pasting code. In fact, we could probably export the whole lot for you.

Advantages to hosting XenWiki through the [XenBase] server

  1. direct links possible between Xenwiki and XenBase areas
    • this is possible (and probably easier) on OWW as we have experience with other databases (BioBricks), and could probably easily modify it to contain your information.
  2. control
  3. private spaces -> one could implement a scheme (not technically possible yet, but could be programmed in) where individual pages have different rights. Essentially, giving users the ability to place read/write controls on data.

What should be on this wiki vs what is already on JGI and XenBase

Discuss and decide what we need so we can ask NIH, get involved with NIH "report" recommendations

  • notes from 11th Xen Meeting: Instructions for submitting a proposal NHGRC: see 'white paper' instructions on web site (need the link)
  • program announcement due Jan 18 2007, document on web site but applications that do the best produce a resource for the community and also do good science, US labs and non-US labs are considered.

Next Meeting

  • will be in Germany, details TBA
  • contact committee for ideas for next meeting

Collected from Bruce Blumberg's excellent Xine

Xine in html format, back issues

Links to useful sources of information for Xenopus (in no particular order) general interest and utility

Genomic resources



Recent changes

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14 June 2024

N    12:55  UA Biophysics:Peptides and IA‎‎ 3 changes history +1,837 [Elizabeth Suesca‎ (3×)]
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12:45 (cur | prev) +1,861 Elizabeth Suesca talk contribs (Created page with "Debido a la rápida aparición de mecanismos de resistencia a antibióticos en diferentes microorganismos patógenos potencialmente mortales a nivel mundial, existe un gran interés en la identificación de agentes antimicrobianos alternativos que puedan ayudar en el desarrollo de nuevas estrategias de tratamiento. Mediante la aplicación de una rutina de Deep Learning, desarrollada y publicada por el grupo de investigación proponente, se predecirá una lista de candida...")
     12:45  Biophysics‎‎ 3 changes history +204 [Elizabeth Suesca‎ (3×)]
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13 June 2024

     14:39 User creation log User account Yannvrb talk contribs was created by Yar talk contribs and password was sent by email ‎
     13:57  Magni:Back Door‎‎ 2 changes history +199 [Lorenzo Pasotti‎ (2×)]
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13:54 (cur | prev) +48 Lorenzo Pasotti talk contribs (→‎E. coli strains)
     08:28  WAKNA:Basics‎‎ 3 changes history −73 [Berthold Drexler‎ (3×)]
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08:26 (cur | prev) +131 Berthold Drexler talk contribs (→‎halbsitzende Lagerung und Luftembolie)

12 June 2024

N    13:10  Karas Lab:YAEL Electrode Localization‎‎ 2 changes history +859 [Aclesage‎ (2×)]
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13:08 (cur | prev) +274 Aclesage talk contribs (Created page with "<b>Y</b>our <b>A</b>dvanced <b>E</b>lectrode <b>L</b>ocalizer (YAEL) is free and open-source software for localizing and visualizing electrodes. YAEL is a sister package to the RAVE software toolbox for the analysis of intracranial electroencephalogram (iEEG) data.")
     13:04  Karas Lab:Lab Notebook‎‎ 2 changes history +48 [Aclesage‎ (2×)]
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11 June 2024

N    19:16  BioMicroCenter:PricingFY2025 diffhist +28,119 Stuart S. Levine talk contribs (Created page with "''' PRICING UPDATE 7/1/2024 ''' == SEQUENCING == Please note that samples submitted from '''CORE LAB'''s will be given priority on all equipment. The BioMicro Center reserves the right to reject samples for any reason. <BR><BR> === NOVASEQ SEQUENCING === {| class="wikitable" border=1  ! NOVASEQ SEQUENCING !width=80| CORE LAB !width=80| MIT !width=80| Non-MIT !width=80| uni...")
     18:40  BioMicroCenter:Pricing diffhist +54 Stuart S. Levine talk contribs (→‎COMPUTATIONAL SERVICES)
     08:18  Forster Lab‎‎ 2 changes history +153 [Anthony C. Forster‎ (2×)]
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08:16 (cur | prev) +149 Anthony C. Forster talk contribs (→‎The Boss!?)
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