Harvard:Biophysics 242r/2011
Contents
Course overview
- Graduate level seminar focusing on in-silico design pipelines for nucleic acid- and protein-based molecular machinery and programmable molecular systems. Students are mentored to produce substantial midterm and final group design projects.
- No formal prerequisites. Projects are tailored to each student's strengths and interests.
Example topics for final design project
- Artificial chemotactic swimmers
- Nonequilibrium networks of nano-machines mimicking dynamic instability in the cytoskeleton
- Nucleic acid logic automata responsive to microRNAs in serum
- Self-assembled solar energy harvester based on bio-inorganic nano-antennae for uv-vis
- Systematic debugging of DNA labeling chemistries by atomic-resolution TEM imaging of DNA origami
- Light-controlled transcriptional activation and repression through rational molecular design
- Directed evolution of tissue engineering scaffold nano-materials
- Programmable multistep chemical synthesis by templating on nanostructures
- Ultra-sensitive molecular signal processing for synthetic biology
- Synthetic nanostructure - virus conjugates
- Nano-breadboards for probing electron transport in proteins
- Replication of information in synthetic crystals
- Etc.
Logistics
- Meeting time: 2011 Spring Term, Mondays and Wednesdays, 100 pm — 230 pm, with optional sessions for working on projects from 230 pm to 330 pm, starting on Monday, February 7
- Form teams for midterm projects on Monday, February 7
- Form teams for final projects on Monday, March 21
- First class on Monday, January 24
- Location: CLSB521
- No exams
- Prerequisites: none
- Grading
- 33% Participation
- 33% Midterm project
- 33% Final project
- Harvard course site
- Harvard:Biophysics_242r/2011/Course Development Log
Background Info and previous class projects
Recent changes
16 August 2018
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11:46 . . Peisheng Xu (talk | contribs) uploaded File:Xu Lab Mingming.png |
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11:38 . . Peisheng Xu (talk | contribs) uploaded File:Xu Lab Mingming.jpg |
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Xu lab:Lab Members (2 changes | history) . . (+115) . . [Peisheng Xu (2×)] |
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| 11:35 | Xu lab (diff | hist) . . (+239) . . Peisheng Xu (talk | contribs) (→Personnel) |
| 11:29 | Xu lab:Publications (diff | hist) . . (+150) . . Peisheng Xu (talk | contribs) |
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(User creation log) . . [Yar (2×)] |
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10:57 . . User account Zeninho (talk | contribs) was created by Yar (talk | contribs) and password was sent by email |
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10:57 . . User account Metalscut4u (talk | contribs) was created by Yar (talk | contribs) and password was sent by email |
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Lidstrom:Journal Club (2 changes | history) . . (+363) . . [Aaron W. Puri (2×)] |
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(cur | prev) . . (+362) . . Aaron W. Puri (talk | contribs) (→Journal Club Schedule) |
| 10:27 | Chenlab:Lab Members (diff | hist) . . (-3) . . Kaifu Chen (talk | contribs) |
| 06:53 | Vectors (diff | hist) . . (+422) . . Wouter De Schamphelaire (talk | contribs) (→Online vector databases) |
| 06:43 | E. coli genotypes (diff | hist) . . (+146) . . Wouter De Schamphelaire (talk | contribs) |
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User:Victor Tapia (2 changes | history) . . (+18) . . [Victor Tapia (2×)] |
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(cur | prev) . . (+19) . . Victor Tapia (talk | contribs) (→Contact Information) |
15 August 2018
| 20:47 | Lee:JC (diff | hist) . . (0) . . Wooin Lee (talk | contribs) (→Lab meeting schedule) |
| 17:20 | (User creation log) . . User account Sandeep25789 (talk | contribs) was created by Yar (talk | contribs) and password was sent by email |
| 15:48 | Yeo lab:Contact (diff | hist) . . (-20) . . Yoonyeo (talk | contribs) (→Contact) |
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Renhao Li Lab:Publications (2 changes | history) . . (+255) . . [Renhao Li (2×)] |
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(cur | prev) . . (+255) . . Renhao Li (talk | contribs) (→2018) |
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User:JernejTurnsek (2 changes | history) . . (+48) . . [Jernej Turnsek (2×)] |
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Peyton:Polio et al., Lung biomechanics (2 changes | history) . . (+509) . . [Speyton (2×)] |
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| 08:15 | Peyton:Internal (diff | hist) . . (+96) . . Speyton (talk | contribs) |
| 05:16 | Theobaldtwang:Data (diff | hist) . . (+84) . . Theobald, Tianwen Wang (talk | contribs) |
14 August 2018
| 16:18 | (User creation log) . . User account Dtegs (talk | contribs) was created by Yar (talk | contribs) and password was sent by email |
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Chenlab:Recruiting (2 changes | history) . . (+1,368) . . [Kaifu Chen (2×)] |
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| m 11:21 | BuildACell/CellFree (diff | hist) . . (+203) . . Wpoole (talk | contribs) |
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Yeo lab:meetings (5 changes | history) . . (+35) . . [Yoonyeo (5×)] |
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CAMRI:SeminarSeries (2 changes | history) . . (+79) . . [Michael S Beauchamp (2×)] |
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Kartzinel:Policies (8 changes | history) . . (+2,116) . . [Tyler R. Kartzinel (8×)] |
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(cur | prev) . . (+66) . . Tyler R. Kartzinel (talk | contribs) (→Metabarcoding) |
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(cur | prev) . . (+31) . . Tyler R. Kartzinel (talk | contribs) (→Metabarcoding) |
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(cur | prev) . . (+556) . . Tyler R. Kartzinel (talk | contribs) (→Project Planning) |
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(cur | prev) . . (+23) . . Tyler R. Kartzinel (talk | contribs) |
| 08:49 | Peyton:Internal (diff | hist) . . (+60) . . Carey Dougan (talk | contribs) (→Protocols) |
| 08:48 | (Upload log) . . Carey Dougan (talk | contribs) uploaded File:3D Printing Protocol.pdf |
13 August 2018
| N 19:50 | BuildACell\CellFree\DataRepository (diff | hist) . . (+381) . . Wpoole (talk | contribs) (Created page with "{| Experiment Title | Contributor (with email) | Experiment Date | Extract Type and Organism (eg E. Coli S30, PURE) | Energy Solution Type or Identifier | Brief Comments on Ex...") |
| m 19:41 | BuildACell\CellFree\Protocols (diff | hist) . . (-1) . . Wpoole (talk | contribs) |
