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Introduction

The BioGang is an informal, distributed collection of geeky life scientists who have come together to try and think of cool problems and ideas that can be solved collaboratively. While many of us are informaticians and modelers, the Gang welcomes all comers. We have a variety of backgrounds and experiences but all share a love of science, openness and belief in the power of the web to enable distributed collaboration and community. Neil Saunders summed our approach and attitude up very well.

"A biogang characteristic: lack of respect for institutional boundaries and restrictions?"

The BioGang was created following a blog post, partially inspired by the ideafactory blog (Via a thread on the six hour startup google group

Unless otherwise stated content of the BioGang is shared under an CC-BY license and projects are likely to be open source and shared on an appropriate code repository (e.g. Google Code or GitHub)

News: Many members of The BioGang were involved in the new book Beautiful Data: The story behind elegant data solutions

Concepts

Some of the core concepts driving The BioGang are discussed below.


What is "Bursty Work"?

In the context of this Wiki, the "Burst Work" concept was inspired by a tweet by Chris Messina. He said

It just dawned on me that startups are obsolete. Sustainable, distributed bursty work is the future.

The idea is that a group of smart people can come together to start projects. These people can be spread out around the corners of the globe, working to get a project to a stage when it could be passed on to someone else or carried forward if that's the best way forward. That philosophy is sorely missing from the world of computational life science, and the hope is that this wiki will serve as a catalyst for such projects

What is an "Idea Factory"?

The concept of an idea factory in the context of bursty work is to build a collective of people and harness their collective intelligence. The days of think tanks like those at Bell Labs or PARC are long gone, but the internet allows us to bring together loosely coupled groups of people.

Pages

Members

External Links

Recent Changes

Recent updates to the lab wiki

List of abbreviations:
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23 April 2019

     21:20 

Alison S King Week 12‎‎ (2 changes | history) . . (+1,020). . [Alison S King‎ (2×)]

     

21:20

(cur | prev) . . (+541). . Alison S King (talk | contribs) (Answers from Literature: answered some)

     

16:40

(cur | prev) . . (+479). . Alison S King (talk | contribs) (References: reference for assignment page and Tai)

     17:48 

Nannochloropsis genetic elements‎‎ (3 changes | history) . . (+433). . [Poli‎ (3×)]

     

17:48

(cur | prev) . . (0). . Poli (talk | contribs) (Codon optimization)

     

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(cur | prev) . . (+387). . Poli (talk | contribs) (Codon optimization)

     

17:24

(cur | prev) . . (+46). . Poli (talk | contribs) (Localization peptides)

     17:24 (User creation log) . . User account CoryCasikenquirm (talk | contribs) was created by Yar (talk | contribs) and password was sent by email ‎

N    16:53 

Angela C Abarquez Week 12‎‎ (6 changes | history) . . (+471). . [Angela C Abarquez‎ (6×)]

     

16:53

(cur | prev) . . (+58). . Angela C Abarquez (talk | contribs) (added second file)

     

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(cur | prev) . . (0). . Angela C Abarquez (talk | contribs) (edit format)

     

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(cur | prev) . . (+2). . Angela C Abarquez (talk | contribs) (edit file format)

     

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(cur | prev) . . (+80). . Angela C Abarquez (talk | contribs) (added wiki file)

     

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(cur | prev) . . (+105). . Angela C Abarquez (talk | contribs) (added link to box)

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(cur | prev) . . (+226). . Angela C Abarquez (talk | contribs) (added headers)

     16:52 

(Upload log). .

[Sahil Patel‎; Austindias‎; Desireegonzalez‎ (2×); Angela C Abarquez‎ (2×); Leannekuwahara‎ (3×)]

     

16:52

. . Angela C Abarquez (talk | contribs) uploaded File:AA chemostat 2nutrient script.m.zip(script MATLAB file)

     

16:49

. . Angela C Abarquez (talk | contribs) uploaded File:AA chemostat 2nutrient dynamics.m.zip(Matlab dynamics file)

     

14:56

. . Austindias (talk | contribs) uploaded File:Chemostat 2nutrient AD.zip

     

11:02

. . Sahil Patel (talk | contribs) uploaded File:SP Week12 Matlab.zip

     

10:28

. . Leannekuwahara (talk | contribs) uploaded File:CHEMOSTAT DYNAMICS-Try 3.pdf(uploaded t3)

     

10:14

. . Leannekuwahara (talk | contribs) uploaded a new version of File:CHEMOSTAT DYNAMICS-Try 2.pdf(new file)

     

09:54

. . Leannekuwahara (talk | contribs) uploaded File:CHEMOSTAT DYNAMICS-Try 2.pdf(try 2 chemo matlab)

     

09:43

. . Desireegonzalez (talk | contribs) uploaded File:IMG 1564.jpg(adding image of calculations)

     

09:41

. . Desireegonzalez (talk | contribs) uploaded File:IMG 1563.jpg(adding photo of calculations)

     16:42  Template:Angela C Abarquez‎ (diff | hist) . . (+156). . Angela C Abarquez (talk | contribs) (added week 12)

     15:03 

Austindias Week 12‎‎ (2 changes | history) . . (+247). . [Austindias‎ (2×)]

     

15:03

(cur | prev) . . (+118). . Austindias (talk | contribs) (Results: saved parameter value s)

     

14:58

(cur | prev) . . (+129). . Austindias (talk | contribs) (Results: added matlab file zip)

     13:23 

BIOL478/S19:Microarray Data Analysis‎‎ (14 changes | history) . . (+1,965). . [Kam D. Dahlquist‎ (14×)]

     

13:23

(cur | prev) . . (+399). . Kam D. Dahlquist (talk | contribs) (Clustering and GO Term Enrichment with stem (steps 7-8): add make a table)

     

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(cur | prev) . . (-24). . Kam D. Dahlquist (talk | contribs) (Clustering and GO Term Enrichment with stem (steps 7-8): delete reference to strains)

     

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(cur | prev) . . (-13). . Kam D. Dahlquist (talk | contribs) (Clustering and GO Term Enrichment with stem (steps 7-8): correct links for GO term look-up)

     

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(cur | prev) . . (+122). . Kam D. Dahlquist (talk | contribs) (Clustering and GO Term Enrichment with stem (steps 7-8): link to compress/decompress section)

     

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(cur | prev) . . (-2). . Kam D. Dahlquist (talk | contribs) (Compressing/Decompressing Files with 7-Zip: change level of header)

     

11:58

(cur | prev) . . (-10). . Kam D. Dahlquist (talk | contribs) (remove April 22 date)

     

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(cur | prev) . . (+63). . Kam D. Dahlquist (talk | contribs) (GenePix Pro Protocol (Steps 1-3): change Desktop to T: drive)

     

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(cur | prev) . . (+60). . Kam D. Dahlquist (talk | contribs) (Clustering and GO Term Enrichment with stem (steps 7-8): change desktop to T: drive)

     

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(cur | prev) . . (+86). . Kam D. Dahlquist (talk | contribs) (Clustering and GO Term Enrichment with stem (steps 7-8): replace running stem instructions)

     

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(cur | prev) . . (0). . Kam D. Dahlquist (talk | contribs) (Clustering and GO Term Enrichment with stem (steps 7-8): fix links to GO annotations)

     

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(cur | prev) . . (+352). . Kam D. Dahlquist (talk | contribs) (Clustering and GO Term Enrichment with stem (steps 7-8): replace instruction 2 with one from Biomath modeling)

     

11:47

(cur | prev) . . (-1). . Kam D. Dahlquist (talk | contribs) (Comparing results with known data: uncomment stem instructions)

     

11:46

(cur | prev) . . (-77). . Kam D. Dahlquist (talk | contribs) (Comparing results with known data: removed duplicate question)

     

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(cur | prev) . . (+1,010). . Kam D. Dahlquist (talk | contribs) (Sanity Check: Number of genes significantly changed: more questions and explanation)

     12:24 

Rich Lab:Lab Meeting Schedule‎‎ (2 changes | history) . . (+243). . [Yueh-Fen Li‎; Virginia Rich‎]

     

12:24

(cur | prev) . . (+106). . Yueh-Fen Li (talk | contribs)

     

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(cur | prev) . . (+137). . Virginia Rich (talk | contribs)

 m   11:24  User:Korey Griffin‎ (diff | hist) . . (-134). . Korey Griffin (talk | contribs) (Contact)

     11:03 

Sahil Patel Week 12‎‎ (2 changes | history) . . (+493). . [Sahil Patel‎ (2×)]

     

11:03

(cur | prev) . . (+56). . Sahil Patel (talk | contribs) (MATLAB)

     

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(cur | prev) . . (+437). . Sahil Patel (talk | contribs) (Results)

     10:29 

Leanne Kuwahara-Week 12‎‎ (4 changes | history) . . (+322). . [Leannekuwahara‎ (4×)]

     

10:29

(cur | prev) . . (+72). . Leannekuwahara (talk | contribs) (MATLAB Manipulation: added t3)

     

10:02

(cur | prev) . . (+77). . Leannekuwahara (talk | contribs) (MATLAB Manipulation: added plot mean)

     

09:55

(cur | prev) . . (+64). . Leannekuwahara (talk | contribs) (MATLAB Manipulation: uploaded t2)

     

09:42

(cur | prev) . . (+109). . Leannekuwahara (talk | contribs) (Tai et al. (2007) Paper Questions: added e and f)

     09:48 

Desireegonzalez Week 12‎‎ (3 changes | history) . . (+128). . [Desireegonzalez‎ (3×)]

     

09:48

(cur | prev) . . (+10). . Desireegonzalez (talk | contribs) (Questions Refering to the 2007 Tai Research Paper: editing link)

     

09:44

(cur | prev) . . (+59). . Desireegonzalez (talk | contribs) (Questions Refering to the 2007 Tai Research Paper: adding answers)

     

09:42

(cur | prev) . . (+59). . Desireegonzalez (talk | contribs) (Questions Refering to the 2007 Tai Research Paper: adding answers)

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  • [[Category:Biogang_members]]
  • [[Category:User YOUR_COUNTRY]]

at the bottom of your user profile.