Schumer lab:Github and bioinformatics wiki: Difference between revisions
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*[[Schumer lab: Lab github|Lab github]] | *[[Schumer lab: Lab github|Lab github]] | ||
*[[Schumer lab: Common errors|Common errors]] | *[[Schumer lab: Common errors|Common errors]] | ||
*[[Schumer lab: Download data to Sherlock from Admera]] | *[[Schumer lab: Download data to Sherlock from Admera | Download data to Sherlock from Admera]] | ||
*[[Schumer lab: Download data to Sherlock from box, dropbox or googledocs | Download data to Sherlock from box, dropbox or googledocs ]] | *[[Schumer lab: Download data to Sherlock from box, dropbox or googledocs | Download data to Sherlock from box, dropbox or googledocs ]] | ||
*[[Schumer lab: Download data to Sherlock from NCBI's SRA | Download data to Sherlock from NCBI's SRA ]] | *[[Schumer lab: Download data to Sherlock from NCBI's SRA | Download data to Sherlock from NCBI's SRA ]] | ||
Revision as of 16:13, 10 October 2019
Make sure to flag pipelines/scripts that aren't working properly under the Lab Meeting channel on slack
Please remember to add scripts that you have thoroughly tested to the lab GitHub and document here
Bioinformatics topics
- Introduction to command line
- Common file formats
- Commonly used scripts
- Commonly used programs
- Commonly used workflows
- Important simulation tools
- Submitting slurm jobs
- Lab group on Sherlock
- Where can I find commonly used files?
- Useful Unix/perl/awk commands
- Lab github
- Common errors
- Download data to Sherlock from Admera
- Download data to Sherlock from box, dropbox or googledocs
- Download data to Sherlock from NCBI's SRA
- Sharing data with collaborators
