User contributions for Schumer
From OpenWetWare
Jump to navigationJump to search
23 May 2023
- 15:5915:59, 23 May 2023 diff hist +1,024 Schumer lab: Processed files available on Oak No edit summary current
- 15:5015:50, 23 May 2023 diff hist +287 Schumer lab: Backing up raw data →Back up your raw data on external hard drives or the SRA current
- 15:4715:47, 23 May 2023 diff hist +294 N Schumer lab: Data currently available on Oak Created page with "==Data currently available on Oak=== We keep an up-to-date log of data currently available on Oak in the following google sheet. If you download any raw data, please make sure to update it! https://docs.google.com/spreadsheets/d/1dUBAmaz2bNa-LppWxFZ7Vymld-jxrDbh-HC_WFjXSzA/edit#gid=89601434" current
- 15:3715:37, 23 May 2023 diff hist +431 Schumer lab: Depositing data on Oak →Introduction current
- 15:3515:35, 23 May 2023 diff hist +2 Schumer lab: Depositing data on Oak →Current organization system on OAK
- 15:3415:34, 23 May 2023 diff hist +178 Schumer lab: Depositing data on Oak →Current organization system on OAK
- 15:3415:34, 23 May 2023 diff hist +2 Schumer lab: Depositing data on Oak →Important: Documenting data you have uploaded
- 15:3315:33, 23 May 2023 diff hist +9 Schumer lab: Depositing data on Oak →Current organization system on OAK
- 15:3315:33, 23 May 2023 diff hist +1,057 Schumer lab: Depositing data on Oak No edit summary
- 15:1515:15, 23 May 2023 diff hist +83 Schumer lab:Github and bioinformatics wiki →Data map on Oak current
22 May 2023
- 16:4216:42, 22 May 2023 diff hist +372 Schumer lab: Swordtail Dropbox quick guide →Swordtail Dropbox current
- 16:3816:38, 22 May 2023 diff hist +247 N Schumer lab: Swordtail Dropbox quick guide Created page with "==Swordtail Dropbox== Dropbox is home to the most important documents in the lab that aren't raw data. For ease of access, I am also linking some commonly used documents here: *Lab manual *New lab member checklist *Site codes and information *"
- 16:3216:32, 22 May 2023 diff hist +79 Schumer lab:Github and bioinformatics wiki →Where to find important files and resources?
- 16:3016:30, 22 May 2023 diff hist +5 Schumer lab No edit summary current
- 16:2716:27, 22 May 2023 diff hist +1,556 Schumer lab:Grad program No edit summary current
- 15:5315:53, 22 May 2023 diff hist −138 Schumer lab No edit summary
- 15:4215:42, 22 May 2023 diff hist +925 N Schumer lab: Shared resources Created page with "==Introduction== Many people in the lab use the same shared resources and contribute to developing these resources. Resource files such as genome assemblies, annotation files, recombination maps, and files for ancestry inference can all be found in: <span style="font-family:Courier;">/home/groups/schumer/shared_bin/shared_resources ===Current resources map=== This google document describes the most commonly used resources in shared_resources and provides useful info..." current
- 15:3515:35, 22 May 2023 diff hist +103 Schumer lab:Github and bioinformatics wiki No edit summary
2 December 2022
- 10:5710:57, 2 December 2022 diff hist +313 Schumer lab: Commonly used scripts →Scripts that manipulate or summarize fasta files current
- 10:4310:43, 2 December 2022 diff hist +343 Schumer lab: Commonly used scripts →Scripts for managing fastq files
- 10:3510:35, 2 December 2022 diff hist +319 Schumer lab: Commonly used scripts →Scripts for managing fastq files
2 August 2022
- 10:4810:48, 2 August 2022 diff hist +378 Schumer lab: Commonly used scripts →Scripts that convert between file formats
13 December 2021
- 13:3513:35, 13 December 2021 diff hist +318 Schumer lab: Commonly used scripts →Scripts to average by site or in windows
- 13:1513:15, 13 December 2021 diff hist +400 Schumer lab: Commonly used scripts →Scripts to average by site or in windows
- 13:0813:08, 13 December 2021 diff hist +10 Schumer lab: Commonly used workflows No edit summary
7 July 2021
- 16:2816:28, 7 July 2021 diff hist +416 Schumer lab: Important simulation tools →Admixture simulations with admix'em
- 16:2416:24, 7 July 2021 diff hist +793 Schumer lab: Commonly used workflows No edit summary
- 16:1816:18, 7 July 2021 diff hist +192 Schumer lab: Commonly used scripts →Miscellaneous
- 16:1616:16, 7 July 2021 diff hist +385 Schumer lab: Commonly used scripts No edit summary
- 16:1516:15, 7 July 2021 diff hist +444 Schumer lab: Commonly used scripts →Miscellaneous
- 16:1316:13, 7 July 2021 diff hist +443 Schumer lab: Commonly used scripts →Scripts to average by site or in windows
- 16:0516:05, 7 July 2021 diff hist +344 Schumer lab: Commonly used scripts →Scripts [or commands] that extract sequences from files
- 16:0316:03, 7 July 2021 diff hist +1,014 Schumer lab: Commonly used scripts →Scripts [or commands] that extract sequences from files
- 16:0116:01, 7 July 2021 diff hist +672 Schumer lab: Commonly used scripts →Scripts relating to ancestry tracts
- 15:5915:59, 7 July 2021 diff hist +654 Schumer lab: Commonly used scripts →Scripts [or commands] that extract sequences from files
- 15:5715:57, 7 July 2021 diff hist +314 Schumer lab: Commonly used scripts No edit summary
- 15:5515:55, 7 July 2021 diff hist +1,002 Schumer lab: Commonly used scripts No edit summary
- 15:4815:48, 7 July 2021 diff hist +315 Schumer lab: Commonly used scripts →Scripts relating to ancestry tracts
- 15:4715:47, 7 July 2021 diff hist +567 Schumer lab: Commonly used scripts No edit summary
- 15:4215:42, 7 July 2021 diff hist +391 N Schumer lab: Lab member folders Created page with "==Lab member folders on OAK== You will often want to backup files that are too big to go on the lab directory on Sherlock but you want to keep more permanently than scratch w..." current
- 15:4015:40, 7 July 2021 diff hist +57 Schumer lab:Github and bioinformatics wiki →Data map on Oak
- 15:3915:39, 7 July 2021 diff hist −18,168 Schumer lab: Processed files available on Oak Replaced content with " __FORCETOC__ ==Previously generated tsv files== Previously generated ancestry tsv files can be found here: <span style="font-family:Courier;">/oak/stanford/groups/sc..." Tag: Replaced
- 15:3415:34, 7 July 2021 diff hist +1 Schumer lab: Where can I find commonly used files →Where can I find shared files and resources?
- 15:3315:33, 7 July 2021 diff hist +901 Schumer lab: Where can I find commonly used files No edit summary
- 15:2215:22, 7 July 2021 diff hist +1,155 Schumer lab: Commonly used workflows No edit summary
15 May 2020
- 19:1219:12, 15 May 2020 diff hist +18 Schumer lab:Grad program →Reading committee & Defense
- 19:1219:12, 15 May 2020 diff hist 0 Schumer lab:Grad program →Other important info
- 19:1119:11, 15 May 2020 diff hist −2 Schumer lab:Grad program →Quals
- 19:1119:11, 15 May 2020 diff hist −8 Schumer lab:Grad program →Quals
- 19:1019:10, 15 May 2020 diff hist −3 Schumer lab:Grad program →Quals