Schumer lab:Github and bioinformatics wiki: Difference between revisions
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'''Make sure to flag pipelines/scripts that aren't working properly under the Lab Meeting channel on slack''' | |||
==Bioinformatics topics== | ==Bioinformatics topics== | ||
*[[Schumer lab: Introduction to command line|Introduction to command line]] | *[[Schumer lab: Introduction to command line|Introduction to command line]] | ||
Revision as of 17:50, 21 April 2019
Make sure to flag pipelines/scripts that aren't working properly under the Lab Meeting channel on slack
Bioinformatics topics
- Introduction to command line
- Common file formats
- Commonly used scripts
- Commonly used programs
- Commonly used workflows
- Important simulation tools
- Submitting slurm jobs
- Lab group on Sherlock
- Where can I find commonly used files?
- Useful Unix/perl/awk commands
- Lab github
- Common errors
- Download data to Sherlock from box, dropbox or googledocs
- Download data to Sherlock from NCBI's SRA
- Sharing data with collaborators
