PHYC500/2007
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Welcome to the wiki site for our seminar series on Biophysics and Medicine!
Check the Help page for information on how to officially enroll in the course.
The entire OWW site (of which this course is a part) is viewable by the entire world but editable only by registered users.
Any page that begins with "PHYC500/2007" is a page we have created specifically for this course. If you create a page (please do!) and it is intended for this course, then make sure is starts with "PHYC500/2007". For example, PHYC500/2007:Sandbox.
How to participate
If you are enrolled or want to participate, you should do this (others, please edit to make more clear!):
- Get an account on OpenWetWare. Go here: OpenWetWare:How_to_join. In the box for "why to join" just say you're in this course (UNM: Physics 500, Steve Koch instructor). Shouldn't be any problem.
- Figure out the basics of wiki. Try here: PHYC500/2007:Sandbox, you can do whatever you want to this page.
- Set up your user page. See the top of the page, click on your name to edit. Maybe put your name, major, etc. A picture would be great.
- Contribute! Maybe a good start is here: PHYC500/2007:Interactions
Goals of the wiki
- Encourage more discussions about the seminars or just about biophysics or science in general
- Place to put links to slides or supplemental information
- Other?
Recent updates to the course
List of abbreviations:
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- This edit created a new page (also see list of new pages)
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- This is a minor edit
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3 October 2023
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19:08 | Renhao Li Lab:Lab Members 2 changes history +117 [Renhao Li (2×)] | |||
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19:08 (cur | prev) +28 Renhao Li talk contribs (→Alumni) | ||||
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19:07 (cur | prev) +89 Renhao Li talk contribs (→Alumni) | ||||
| 14:32 | BioMicroCenter:People diffhist +56 Sam.mildrum talk contribs (→STAFF) | ||||
| 12:51 | Stanford Biochemistry/biochem equip diffhist −2 Marc Perez talk contribs | ||||
| m 12:47 | Lab Notebook diffhist +1,155 Yar talk contribs (Reverted edits by Nikkichun (talk) to last revision by Yar) | ||||
| 06:02 | Tomlinson:Lab Members diffhist +100 Ryan E. Tomlinson talk contribs | ||||
| 06:02 | Upload log Ryan E. Tomlinson talk contribs uploaded File:AnnieHo 2022.jpg (Annie Ho 2022) | ||||
| 04:19 | Beauchamp:Publications diffhist +19 Michael S Beauchamp talk contribs | ||||
2 October 2023
| m 18:46 | Lab Notebook diffhist −1,155 Nikkichun talk contribs (Setting up opening page) | ||||
| 08:40 | Stanford Biochemistry/biochem equip diffhist +183 Marc Perez talk contribs | ||||
29 September 2023
| 15:57 | Tomlinson:Publications diffhist +247 Ryan E. Tomlinson talk contribs | ||||
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N 13:07 | Making alignments with cactus 3 changes history +3,527 [Qlangdon (3×)] | |||
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13:07 (cur | prev) +200 Qlangdon talk contribs | ||||
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13:03 (cur | prev) +90 Qlangdon talk contribs | ||||
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13:01 (cur | prev) +3,237 Qlangdon talk contribs (Created page with "To run Cactus you'll need your genomes. And an input file where the first line is a Newick style tree of the names of what you want to align, followed by lines that have a tab delimited name / path. The name must be unique and it will be what that genome is called in the alignment. The path is where that fasta is located. These are supposed to be softmasked genomes, so if you can do that before. Here's an example of aligning the Xbir_pacbio_v2023.1 genome with the X....") | |||
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12:55 | Schumer lab: Commonly used workflows 3 changes history +104 [Tododge; Qlangdon (2×)] | |||
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12:55 (cur | prev) +4 Qlangdon talk contribs (→Liftovers using cactus alignments) | ||||
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12:54 (cur | prev) +97 Qlangdon talk contribs (→Liftovers using cactus alignments) | ||||
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10:42 (cur | prev) +3 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | ||||
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12:00 | McClean:LabMtgSchedule 3 changes history +99 [Megan N McClean (3×)] | |||
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12:00 (cur | prev) +35 Megan N McClean talk contribs | ||||
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11:54 (cur | prev) +45 Megan N McClean talk contribs | ||||
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11:26 (cur | prev) +19 Megan N McClean talk contribs | ||||
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07:14 | Tomlinson:LabMeeting 3 changes history +38 [Ryan E. Tomlinson (3×)] | |||
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07:14 (cur | prev) +1 Ryan E. Tomlinson talk contribs | ||||
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06:33 (cur | prev) +14 Ryan E. Tomlinson talk contribs | ||||
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06:33 (cur | prev) +23 Ryan E. Tomlinson talk contribs | ||||
28 September 2023
| 18:01 | YAEL:Help diffhist −6 Zhengjia talk contribs (→Support) | ||||
| 14:49 | Upload log Dbar talk contribs uploaded File:ChAMP protocol v1.0 Freeze.pdf (ChAMP protocol, version 1.0.) | ||||
| 14:36 | CHIP:News diffhist −21 Gabor Balazsi talk contribs | ||||
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14:36 | (User creation log) [Yar (3×)] | |||
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14:36 User account Dbar talk contribs was created by Yar talk contribs and password was sent by email | ||||
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14:35 User account Srproulx talk contribs was created by Yar talk contribs and password was sent by email | ||||
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14:35 User account Perc3vall talk contribs was created by Yar talk contribs and password was sent by email | ||||
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11:29 | Schumer lab: Commonly used workflows 9 changes history +2,130 [Tododge (9×)] | |||
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11:29 (cur | prev) +174 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | ||||
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11:26 (cur | prev) +5 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | ||||
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11:25 (cur | prev) +363 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | |||
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10:51 (cur | prev) +157 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | ||||
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10:49 (cur | prev) +1,041 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | |||
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10:10 (cur | prev) −97 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | |||
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10:07 (cur | prev) +19 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | |||
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09:59 (cur | prev) +362 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | ||||
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09:55 (cur | prev) +106 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | ||||
27 September 2023
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16:40 | Schumer lab: Commonly used workflows 4 changes history +795 [Tododge (4×)] | |||
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16:40 (cur | prev) +68 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | |||
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16:28 (cur | prev) +39 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | ||||
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16:25 (cur | prev) +698 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | ||||
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12:10 (cur | prev) −10 Tododge talk contribs (→Genome assembly with hifiasm - PacBio HiFi data) | ||||
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14:35 | Tomlinson:JCSchedule 2 changes history −9 [Ryan E. Tomlinson (2×)] | |||
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14:35 (cur | prev) −22 Ryan E. Tomlinson talk contribs | ||||
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09:12 (cur | prev) +13 Ryan E. Tomlinson talk contribs | ||||
