OHSU Knight Cancer Institute Research Groups

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Equipped with his five senses, man explores the universe around him and calls the adventure Science. ~Edwin Powell Hubble, The Nature of Science, 1954

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About Us

  • We are a group of Cancer Research Labs in the OHSU Knight Cancer Institute in Portland, OR., working together on different approaches aimed at understanding the basic science of cancer. This site is a collaborative web site called a wiki, so members of this group can add content, post pictures from events, participate in discussions, etc. To do so, you need an OpenWetWare account--to get one, see this page to sign up. If you are unfamiliar with editing a wiki, check out this tutorial. For more global changes and suggestions, please use the tab at the top of the page called talk. An example of a collaborative wiki-based discussion is here.

OCI Research Groups

  • Please add your text and links and revise these pages at will
  • Follow the tutorials listed below and if you get stuck make an appointment with me and we can work quickly together. If you can write an email and google, you can make a wiki!
  • email Maureen through OpenWetWare or contact me by:
  • Phone: 503-494-1123
  • OWW users: Post a message on Maureen's talk page

Action Items

  1. Get this website up and running.
  2. Pursue the possibility of a new graduate "Program in Cancer Biology". - Matt 15:47, 24 July 2008 (UTC): Met with Dr. Hallick on July 23rd and obtained the forms necessary for approval of a new Graduate Program. This is a process that will take up to a year to complete. - Matt 21:37, 6 August 2008 (UTC):Started working on the Proposal, realtime version can be found here [1]
  3. Institute a "Basic Science Retreat" in the Fall that is coordinated with the OCI retreat and monthly research presentations.

Community Bulletin Board

Visitors

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Recent changes

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3 October 2023

     19:08  Renhao Li Lab:Lab Members‎‎ 2 changes history +117 [Renhao Li‎ (2×)]
     
19:08 (cur | prev) +28 Renhao Li talk contribs (→‎Alumni)
     
19:07 (cur | prev) +89 Renhao Li talk contribs (→‎Alumni)
     14:32  BioMicroCenter:People diffhist +56 Sam.mildrum talk contribs (→‎STAFF)
     12:51  Stanford Biochemistry/biochem equip diffhist −2 Marc Perez talk contribs
 m   12:47  Lab Notebook diffhist +1,155 Yar talk contribs (Reverted edits by Nikkichun (talk) to last revision by Yar) Tag: Rollback
     06:02  Tomlinson:Lab Members diffhist +100 Ryan E. Tomlinson talk contribs
     06:02 Upload log Ryan E. Tomlinson talk contribs uploaded File:AnnieHo 2022.jpg(Annie Ho 2022)
     04:19  Beauchamp:Publications diffhist +19 Michael S Beauchamp talk contribs

2 October 2023

 m   18:46  Lab Notebook diffhist −1,155 Nikkichun talk contribs (Setting up opening page) Tag: Reverted
     08:40  Stanford Biochemistry/biochem equip diffhist +183 Marc Perez talk contribs

29 September 2023

     15:57  Tomlinson:Publications diffhist +247 Ryan E. Tomlinson talk contribs
N    13:07  Making alignments with cactus‎‎ 3 changes history +3,527 [Qlangdon‎ (3×)]
     
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13:01 (cur | prev) +3,237 Qlangdon talk contribs (Created page with "To run Cactus you'll need your genomes. And an input file where the first line is a Newick style tree of the names of what you want to align, followed by lines that have a tab delimited name / path. The name must be unique and it will be what that genome is called in the alignment. The path is where that fasta is located. These are supposed to be softmasked genomes, so if you can do that before. Here's an example of aligning the Xbir_pacbio_v2023.1 genome with the X....")
     12:55  Schumer lab: Commonly used workflows‎‎ 3 changes history +104 [Tododge‎; Qlangdon‎ (2×)]
     
12:55 (cur | prev) +4 Qlangdon talk contribs (→‎Liftovers using cactus alignments)
     
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10:42 (cur | prev) +3 Tododge talk contribs (→‎Genome assembly from PacBio HiFi data)
     12:00  McClean:LabMtgSchedule‎‎ 3 changes history +99 [Megan N McClean‎ (3×)]
     
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     07:14  Tomlinson:LabMeeting‎‎ 3 changes history +38 [Ryan E. Tomlinson‎ (3×)]
     
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28 September 2023

     18:01  YAEL:Help diffhist −6 Zhengjia talk contribs (→‎Support)
     14:49 Upload log Dbar talk contribs uploaded File:ChAMP protocol v1.0 Freeze.pdf(ChAMP protocol, version 1.0.)
     14:36  CHIP:News diffhist −21 Gabor Balazsi talk contribs
     14:36  (User creation log) [Yar‎ (3×)]
     
14:36 User account Dbar talk contribs was created by Yar talk contribs and password was sent by email ‎
     
14:35 User account Srproulx talk contribs was created by Yar talk contribs and password was sent by email ‎
     
14:35 User account Perc3vall talk contribs was created by Yar talk contribs and password was sent by email ‎
     11:29  Schumer lab: Commonly used workflows‎‎ 9 changes history +2,130 [Tododge‎ (9×)]
     
11:29 (cur | prev) +174 Tododge talk contribs (→‎Genome assembly from PacBio HiFi data)
     
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09:55 (cur | prev) +106 Tododge talk contribs (→‎Genome assembly from PacBio HiFi data)

27 September 2023

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