OHSU Knight Cancer Institute Research Groups
From OpenWetWare
(Redirected from OHSU Cancer Institute Research Groups)
Home Faculty Graduate Program Postdocs OHSU Knight Core Facilities
Programs
Res Group Meetings
Cancer Journal Club
Cell/CANB 616
Gen. Inst/R3 Club
CANB 610
About Us
- We are a group of Cancer Research Labs in the OHSU Knight Cancer Institute in Portland, OR., working together on different approaches aimed at understanding the basic science of cancer. This site is a collaborative web site called a wiki, so members of this group can add content, post pictures from events, participate in discussions, etc. To do so, you need an OpenWetWare account--to get one, see this page to sign up. If you are unfamiliar with editing a wiki, check out this tutorial. For more global changes and suggestions, please use the tab at the top of the page called talk. An example of a collaborative wiki-based discussion is here.
OCI Research Groups
- Please add your text and links and revise these pages at will
- Follow the tutorials listed below and if you get stuck make an appointment with me and we can work quickly together. If you can write an email and google, you can make a wiki!
- email Maureen through OpenWetWare or contact me by:
- Phone: 503-494-1123
- OWW users: Post a message on Maureen's talk page
Action Items
- Get this website up and running.
- Pursue the possibility of a new graduate "Program in Cancer Biology". - Matt 15:47, 24 July 2008 (UTC): Met with Dr. Hallick on July 23rd and obtained the forms necessary for approval of a new Graduate Program. This is a process that will take up to a year to complete. - Matt 21:37, 6 August 2008 (UTC):Started working on the Proposal, realtime version can be found here [1]
- Institute a "Basic Science Retreat" in the Fall that is coordinated with the OCI retreat and monthly research presentations.
Community Bulletin Board
- RSS feed for recent changes in OCI RG wiki click here
- RSS feed for recent changes in OCI RG wiki for iPhone. Point iphone here and then click "+" to add icon to your homescreen
- --Maureen 05:08, 20 June 2008 (UTC) good listening on the way to work: Podcasts of AACR 2008 annual meeting
- Rosie wanted something...what was it? (ans: Q&A page for lab personnel to contact each other about reagents, protocols, etc).
- Done
- --Maureen 14:31, 27 June 2008 (UTC) Go Fish page added
- communication option to consider: Friendfeed
- Go to the private OHSU Cancer Center Friend Feed Room by clicking here. When prompted, ask to join! Maureen will then approve.
- Link to web tools Maureen presented in Cancer Group Meeting: list of Web 2.0 tools for Scientists
Visitors
<html> <a href="http://www4.clustrmaps.com/counter/maps.php?url=http://openwetware.org/wiki/Oregon_Cancer_Institute_Research_Groups" id="clustrMapsLink"><img src="http://www4.clustrmaps.com/counter/index2.php?url=http://openwetware.org/wiki/Oregon_Cancer_Institute_Research_Groups" style="border:0px;" alt="Locations of visitors to this page" title="Locations of visitors to this page" id="clustrMapsImg" onerror="this.onerror=null; this.src='http://www2.clustrmaps.com/images/clustrmaps-back-soon.jpg'; document.getElementById('clustrMapsLink').href='http://www2.clustrmaps.com';" /> </a> </html>
<wikionly>
Recent changes
List of abbreviations:
- N
- This edit created a new page (also see list of new pages)
- m
- This is a minor edit
- b
- This edit was performed by a bot
- (±123)
- The page size changed by this number of bytes
3 October 2023
|
|
19:08 | Renhao Li Lab:Lab Members 2 changes history +117 [Renhao Li (2×)] | |||
|
|
19:08 (cur | prev) +28 Renhao Li talk contribs (→Alumni) | ||||
|
|
19:07 (cur | prev) +89 Renhao Li talk contribs (→Alumni) | ||||
| 14:32 | BioMicroCenter:People diffhist +56 Sam.mildrum talk contribs (→STAFF) | ||||
| 12:51 | Stanford Biochemistry/biochem equip diffhist −2 Marc Perez talk contribs | ||||
| m 12:47 | Lab Notebook diffhist +1,155 Yar talk contribs (Reverted edits by Nikkichun (talk) to last revision by Yar) | ||||
| 06:02 | Tomlinson:Lab Members diffhist +100 Ryan E. Tomlinson talk contribs | ||||
| 06:02 | Upload log Ryan E. Tomlinson talk contribs uploaded File:AnnieHo 2022.jpg (Annie Ho 2022) | ||||
| 04:19 | Beauchamp:Publications diffhist +19 Michael S Beauchamp talk contribs | ||||
2 October 2023
| m 18:46 | Lab Notebook diffhist −1,155 Nikkichun talk contribs (Setting up opening page) | ||||
| 08:40 | Stanford Biochemistry/biochem equip diffhist +183 Marc Perez talk contribs | ||||
29 September 2023
| 15:57 | Tomlinson:Publications diffhist +247 Ryan E. Tomlinson talk contribs | ||||
|
|
N 13:07 | Making alignments with cactus 3 changes history +3,527 [Qlangdon (3×)] | |||
|
|
13:07 (cur | prev) +200 Qlangdon talk contribs | ||||
|
|
13:03 (cur | prev) +90 Qlangdon talk contribs | ||||
| N |
|
13:01 (cur | prev) +3,237 Qlangdon talk contribs (Created page with "To run Cactus you'll need your genomes. And an input file where the first line is a Newick style tree of the names of what you want to align, followed by lines that have a tab delimited name / path. The name must be unique and it will be what that genome is called in the alignment. The path is where that fasta is located. These are supposed to be softmasked genomes, so if you can do that before. Here's an example of aligning the Xbir_pacbio_v2023.1 genome with the X....") | |||
|
|
12:55 | Schumer lab: Commonly used workflows 3 changes history +104 [Tododge; Qlangdon (2×)] | |||
|
|
12:55 (cur | prev) +4 Qlangdon talk contribs (→Liftovers using cactus alignments) | ||||
|
|
12:54 (cur | prev) +97 Qlangdon talk contribs (→Liftovers using cactus alignments) | ||||
|
|
10:42 (cur | prev) +3 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | ||||
|
|
12:00 | McClean:LabMtgSchedule 3 changes history +99 [Megan N McClean (3×)] | |||
|
|
12:00 (cur | prev) +35 Megan N McClean talk contribs | ||||
|
|
11:54 (cur | prev) +45 Megan N McClean talk contribs | ||||
|
|
11:26 (cur | prev) +19 Megan N McClean talk contribs | ||||
|
|
07:14 | Tomlinson:LabMeeting 3 changes history +38 [Ryan E. Tomlinson (3×)] | |||
|
|
07:14 (cur | prev) +1 Ryan E. Tomlinson talk contribs | ||||
|
|
06:33 (cur | prev) +14 Ryan E. Tomlinson talk contribs | ||||
|
|
06:33 (cur | prev) +23 Ryan E. Tomlinson talk contribs | ||||
28 September 2023
| 18:01 | YAEL:Help diffhist −6 Zhengjia talk contribs (→Support) | ||||
| 14:49 | Upload log Dbar talk contribs uploaded File:ChAMP protocol v1.0 Freeze.pdf (ChAMP protocol, version 1.0.) | ||||
| 14:36 | CHIP:News diffhist −21 Gabor Balazsi talk contribs | ||||
|
|
14:36 | (User creation log) [Yar (3×)] | |||
|
|
14:36 User account Dbar talk contribs was created by Yar talk contribs and password was sent by email | ||||
|
|
14:35 User account Srproulx talk contribs was created by Yar talk contribs and password was sent by email | ||||
|
|
14:35 User account Perc3vall talk contribs was created by Yar talk contribs and password was sent by email | ||||
|
|
11:29 | Schumer lab: Commonly used workflows 9 changes history +2,130 [Tododge (9×)] | |||
|
|
11:29 (cur | prev) +174 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | ||||
|
|
11:26 (cur | prev) +5 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | ||||
| m |
|
11:25 (cur | prev) +363 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | |||
|
|
10:51 (cur | prev) +157 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | ||||
| m |
|
10:49 (cur | prev) +1,041 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | |||
| m |
|
10:10 (cur | prev) −97 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | |||
| m |
|
10:07 (cur | prev) +19 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | |||
|
|
09:59 (cur | prev) +362 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | ||||
|
|
09:55 (cur | prev) +106 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | ||||
27 September 2023
|
|
16:40 | Schumer lab: Commonly used workflows 4 changes history +795 [Tododge (4×)] | |||
| m |
|
16:40 (cur | prev) +68 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | |||
|
|
16:28 (cur | prev) +39 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | ||||
|
|
16:25 (cur | prev) +698 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | ||||
|
|
12:10 (cur | prev) −10 Tododge talk contribs (→Genome assembly with hifiasm - PacBio HiFi data) | ||||
|
|
14:35 | Tomlinson:JCSchedule 2 changes history −9 [Ryan E. Tomlinson (2×)] | |||
|
|
14:35 (cur | prev) −22 Ryan E. Tomlinson talk contribs | ||||
|
|
09:12 (cur | prev) +13 Ryan E. Tomlinson talk contribs | ||||
</wikionly>
