Hoatlin:CONJ606/PMCB

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CONJ606.PMCB

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Course overview

  • Fall 2017
  • Location: OHSU main campus.
Tuesdays practice and review session in RJH 6524 (MMI area) from 2 -4pm (faculty present 2-3pm). Note that the presentation room, RJH 2324 will also be reserved for practice 2-4 pm on Tuesdays
Thursdays 1:30 to 3:30 (Presentations). EdComm will record presentations on Thursdays from 1:30-2:30. Evaluations and discussion 2:30-3:30 pm.

This is an advanced graduate course with an emphasis on the latest research from the primary literature along with in-depth presentation of the basic concepts of biochemistry and molecular biology. Faculty have selected journal articles that should require re-wrting the textbooks, if results prove to be valid.

This class is not a faculty-driven lecture class, but is based on student presentations of background material and research papers selected from the current literature. It is designed to maximize active roles for students in each class.

Goals of the Class

  1. Encourage students to seize every available resource for understanding scientific matter (e.g., Nature podcasts, social bookmarking, open science, faculty, each other)
  2. Use face-to-face mentoring with expert faculty in an area of recent groundbreaking science discovery.
  3. Get familiar with collaborative web-based tools (OWW and wiki, GitHub, Slack, OneNote)
  4. Create ambassadors for open science
  5. Improve presentation skills, both in form and scientific content
  6. Use presentation skills to formulate and practice an "elevator speech" to use in networking and professional activities
  7. Engage in active group-based learning
  8. Gain leadership and organizational experience
  9. Build a shared web resource for information obtained in the class

Recent updates to the course

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Recent changes
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29 September 2020

     17:43  Aiden Burnett Week 4‎‎ 6 changes history +32,378 [Aiden Burnett‎ (6×)]
     
17:43 (cur | prev) +46 Aiden Burnett talk contribs added ref. & temp.
     
17:42 (cur | prev) -44 Aiden Burnett talk contribs deleyed references and template
     
17:40 (cur | prev) +414 Aiden Burnett talk contribs →‎Methods & Results: moved text to m & r
     
17:39 (cur | prev) -413 Aiden Burnett talk contribs →‎Scientific Conclusion: deleted to move to methods & results
     
17:39 (cur | prev) +413 Aiden Burnett talk contribs →‎Scientific Conclusion: started scientific conclusion
     
17:06 (cur | prev) +31,962 Aiden Burnett talk contribs →‎Methods & Results: worked on methods for the phylogenetic tree portion
N    17:05  BIOL368/F20:Class Journal Week 4‎‎ 3 changes history +5,984 [Nathan R. Beshai‎; Yaniv Maddahi‎ (2×)]
     
17:05 (cur | prev) +2,831 Nathan R. Beshai talk contribs Added journal entry
     
08:24 (cur | prev) +4 Yaniv Maddahi talk contribs Fixed Yaniv numbering problems
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08:23 (cur | prev) +3,149 Yaniv Maddahi talk contribs Added Yaniv Maddahi Reflection
     16:57  (Upload log) [Rolando Cruz Perez‎ (2×); Aiden Burnett‎ (2×)]
     
16:57 Aiden Burnett talk contribs uploaded File:AidenBurnettWeek4Tree.png(phylogenetic tree generated using phylogeny.fr and based on the sequences presented in Wan et al. (2020))
     
16:45 Aiden Burnett talk contribs uploaded File:AidenBurnettWeek4Tree.pdf(phylogenetic tree based on Wan et al. 2020)
     
10:47 Rolando Cruz Perez talk contribs uploaded File:Rperez.jpg(new profile photo)
     
10:40 Rolando Cruz Perez talk contribs uploaded a new version of File:Rcperez bust.JPG
     16:40  Nathan R Beshai Week 4‎‎ 10 changes history +13,511 [Nathan R. Beshai‎ (10×)]
     
16:40 (cur | prev) +232 Nathan R. Beshai talk contribs added signing and statment
     
16:32 (cur | prev) +2 Nathan R. Beshai talk contribs changed formatting
     
16:31 (cur | prev) +1,256 Nathan R. Beshai talk contribs Added references
     
16:21 (cur | prev) +2,054 Nathan R. Beshai talk contribs Added scientific conclusion and acknolagments
     
16:00 (cur | prev) +34 Nathan R. Beshai talk contribs Fixed an error and added acknowledgments and references sections
     
15:56 (cur | prev) +3,584 Nathan R. Beshai talk contribs Finished methods
     
13:59 (cur | prev) +9 Nathan R. Beshai talk contribs fixed some formatting
     
13:55 (cur | prev) +1,887 Nathan R. Beshai talk contribs added part 1 of the methods
     
13:46 (cur | prev) +1,584 Nathan R. Beshai talk contribs finished results
     
12:30 (cur | prev) +2,869 Nathan R. Beshai talk contribs added sequences similar to the figure 3 sequences
     14:01  Yaniv Maddahi Journal Week 4‎‎ 3 changes history +297 [Yaniv Maddahi‎ (3×)]
     
14:01 (cur | prev) +60 Yaniv Maddahi talk contribs Added temporary reference
     
13:44 (cur | prev) -1 Yaniv Maddahi talk contribs Fixed conclusion location
     
13:44 (cur | prev) +238 Yaniv Maddahi talk contribs Added conclusion
     13:50  BIOL368/F20:Class Journal Week 2 diffhist +103 Yaniv Maddahi talk contribs Added yaniv signature
     11:36  Li Lab diffhist -65 Wei Li Bcm talk contribs →‎Computational Cancer Epigenomics and Transcriptomics (PI: Wei Li)
     10:48  User:Rolando Cruz Perez‎‎ 4 changes history -42 [Rolando Cruz Perez‎ (4×)]
     
10:48 (cur | prev) -29 Rolando Cruz Perez talk contribs →‎Contact Info
     
10:48 (cur | prev) 0 Rolando Cruz Perez talk contribs →‎Contact Info
     
10:47 (cur | prev) -6 Rolando Cruz Perez talk contribs →‎Contact Info
     
10:42 (cur | prev) -7 Rolando Cruz Perez talk contribs →‎Education
     02:40  User:Olivier Borkowski diffhist +72 Olivier Borkowski talk contribs →‎Contact Info
     00:39  BIOL368/F20:Week 5‎‎ 10 changes history -3,139 [Kam D. Dahlquist‎ (10×)]
     
00:39 (cur | prev) +116 Kam D. Dahlquist talk contribs →‎Overview: add objectives
     
00:37 (cur | prev) -10 Kam D. Dahlquist talk contribs →‎Exploring the Spike protein Structure: streamline bullet points
     
00:36 (cur | prev) -93 Kam D. Dahlquist talk contribs →‎Exploring the Spike protein Structure: remove a question
     
00:35 (cur | prev) +2,433 Kam D. Dahlquist talk contribs →‎Exploring the Spike protein Structure: paste in the rest of the instructions
     
00:28 (cur | prev) -86 Kam D. Dahlquist talk contribs →‎Exploring the Spike protein Structure: format list
     
00:20 (cur | prev) -406 Kam D. Dahlquist talk contribs →‎Exploring the Spike protein Structure: paste in from 201 in the summer
     
00:10 (cur | prev) -248 Kam D. Dahlquist talk contribs →‎Databases & Tools: remove tools except for UniProt and NCBI structure
     
00:09 (cur | prev) -1,180 Kam D. Dahlquist talk contribs →‎Exploring the Spike protein Structure: remove orf finder and predict protein server
     
00:09 (cur | prev) -4,031 Kam D. Dahlquist talk contribs →‎Sequence Data: remove nucleotide sequence
     
00:01 (cur | prev) +366 Kam D. Dahlquist talk contribs →‎Exploring the Spike protein Structure: update for Wan et al. only

28 September 2020

     23:51  BIOL368/F20:Week 5‎‎ 7 changes history +4,289 [Kam D. Dahlquist‎ (7×)]
     
23:51 (cur | prev) -299 Kam D. Dahlquist talk contribs →‎Exploring the Spike protein Structure: further mods
     
23:47 (cur | prev) -45 Kam D. Dahlquist talk contribs →‎Exploring the Spike protein Structure: begin modification to protocol
     
23:45 (cur | prev) -2 Kam D. Dahlquist talk contribs →‎Sequence Data: fix formatting
     
23:44 (cur | prev) +225 Kam D. Dahlquist talk contribs →‎Sequence Data: add link to NCBI sequences
     
23:44 (cur | prev) +4,056 Kam D. Dahlquist talk contribs →‎Databases & Tools: add spike nucleotide sequence
     
23:40 (cur | prev) +392 Kam D. Dahlquist talk contribs →‎Background: add databases and tools
     
23:35 (cur | prev) -38 Kam D. Dahlquist talk contribs →‎Format and Content Checklist: delete extra header

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