BioMicroCenter:Microarrays: Difference between revisions

BioMicroCenter:Microarrays (view source)

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 === Affymetrix Data Analysis ===
-BioMicro Center will perform the initial data extraction of your samples using Affymetrix GCOS V.1.4. Affymetrix data is scaled to a average intensity of 500 per chip. Six files for each sample will be provided to the user:
+BioMicro Center uses Affymetrix Expression Console and GCRMA for analysis of Affymetrix data. Several files for each sample will be provided to the user:
 * .exp: Experiment information file
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 === Agilent Data Analysis ===
-Agilent Scanner is available to members of the MIT Community for $50 per scan. If you are the first time user, contact [[BioMicroCenter:People|Stephen Goldman]] to set up a bionet account for your data storage. For questions about equipment, contact [[BioMicroCenter:People|Manlin Luo]]
+Agilent Scanner is available to members of the MIT Community for $50 per scan. We are currently running Feature extractor version 9.2. For questions about equipment, contact [[BioMicroCenter:People|Manlin Luo]] After you have completed your scan, please make sure to sign the scanner record form, which is  near the equipment and to remove your files from the computer. CD-Rs are available if needed.
-After you have completed your scan, please make sure to sign the scanner record form, which is  near the equipment and to remove your files from the computer. CD-Rs are available if needed.
 == LINKS ==