Huiming Ding

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Contact Info

Huiming Ding

Huiming Ding


  • PhD, Physics
  • BS, Physics

Research interests

  1. Proportal Prochlorococcus Portal is a web analytical tool for Prochlorococcus, a model system for Integrative Systems Biology.
  2. Galaxy at MIT is a GALAXY INSTANCE installed at MIT.
  3. BioMicroWare (BMW) is an integrative experimental and analytical platform specifically developed at MIT to support next generation sequencing technologies.
  4. LncRNA Project.
  5. Genetic Interaction Network


Refer to the Calandar for schedule, status and progress of active projects.


Search pubget:

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  1. Kashtan N, Roggensack SE, Rodrigue S, Thompson JW, Biller SJ, Coe A, Ding H, Marttinen P, Malmstrom RR, Stocker R, Follows MJ, Stepanauskas R, and Chisholm SW. Single-cell genomics reveals hundreds of coexisting subpopulations in wild Prochlorococcus. Science. 2014 Apr 25;344(6182):416-20. DOI:10.1126/science.1248575 | PubMed ID:24763590 | HubMed [Kashtan-2014]
  2. Kelly L, Ding H, Huang KH, Osburne MS, and Chisholm SW. Genetic diversity in cultured and wild marine cyanomyoviruses reveals phosphorus stress as a strong selective agent. ISME J. 2013 Sep;7(9):1827-41. DOI:10.1038/ismej.2013.58 | PubMed ID:23657361 | HubMed [Kelly-2013]
  3. Klattenhoff CA, Scheuermann JC, Surface LE, Bradley RK, Fields PA, Steinhauser ML, Ding H, Butty VL, Torrey L, Haas S, Abo R, Tabebordbar M, Lee RT, Burge CB, and Boyer LA. Braveheart, a long noncoding RNA required for cardiovascular lineage commitment. Cell. 2013 Jan 31;152(3):570-83. DOI:10.1016/j.cell.2013.01.003 | PubMed ID:23352431 | HubMed [Klattenhoff-2013]
  4. Wamstad JA, Alexander JM, Truty RM, Shrikumar A, Li F, Eilertson KE, Ding H, Wylie JN, Pico AR, Capra JA, Erwin G, Kattman SJ, Keller GM, Srivastava D, Levine SS, Pollard KS, Holloway AK, Boyer LA, and Bruneau BG. Dynamic and coordinated epigenetic regulation of developmental transitions in the cardiac lineage. Cell. 2012 Sep 28;151(1):206-20. DOI:10.1016/j.cell.2012.07.035 | PubMed ID:22981692 | HubMed [Wamstad-2012]
  5. Kelly L, Huang KH, Ding H, and Chisholm SW. ProPortal: a resource for integrated systems biology of Prochlorococcus and its phage. Nucleic Acids Res. 2012 Jan;40(Database issue):D632-40. DOI:10.1093/nar/gkr1022 | PubMed ID:22102570 | HubMed [Kelly-2011]
  6. Error fetching PMID 22125496: [Babu-2011]
  7. Error fetching PMID 21103054: [Greenland-2010]
  8. Error fetching PMID 21076421: [Baryshnikova-2010]
  9. Error fetching PMID 20093466: [Costanzo-2010]
  10. Error fetching PMID 19880385: [Koh-2009]
  11. Error fetching PMID 18677321: [Butland-2008]
  12. Error fetching PMID 17314980: [Collins-2007]
  13. Error fetching PMID 16155567: [Davierwala-2005]
  14. Error fetching PMID 16172405: [Measday-2005]
  15. Error fetching PMID 14764870: [Tong-2004]
  16. Error fetching PMID 14661025: [Parsons-2004]
  17. Error fetching PMID 14690608: [Krogan-2003]
All Medline abstracts: PubMed | HubMed

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