Hellmann
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Recent updates to the lab wiki
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29 September 2023
| 15:57 | Tomlinson:Publications diffhist +247 Ryan E. Tomlinson talk contribs | ||||
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N 13:07 | Making alignments with cactus 3 changes history +3,527 [Qlangdon (3×)] | |||
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13:07 (cur | prev) +200 Qlangdon talk contribs | ||||
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13:03 (cur | prev) +90 Qlangdon talk contribs | ||||
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13:01 (cur | prev) +3,237 Qlangdon talk contribs (Created page with "To run Cactus you'll need your genomes. And an input file where the first line is a Newick style tree of the names of what you want to align, followed by lines that have a tab delimited name / path. The name must be unique and it will be what that genome is called in the alignment. The path is where that fasta is located. These are supposed to be softmasked genomes, so if you can do that before. Here's an example of aligning the Xbir_pacbio_v2023.1 genome with the X....") | |||
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12:55 | Schumer lab: Commonly used workflows 3 changes history +104 [Tododge; Qlangdon (2×)] | |||
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12:55 (cur | prev) +4 Qlangdon talk contribs (→Liftovers using cactus alignments) | ||||
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12:54 (cur | prev) +97 Qlangdon talk contribs (→Liftovers using cactus alignments) | ||||
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10:42 (cur | prev) +3 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | ||||
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12:00 | McClean:LabMtgSchedule 3 changes history +99 [Megan N McClean (3×)] | |||
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12:00 (cur | prev) +35 Megan N McClean talk contribs | ||||
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11:54 (cur | prev) +45 Megan N McClean talk contribs | ||||
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11:26 (cur | prev) +19 Megan N McClean talk contribs | ||||
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07:14 | Tomlinson:LabMeeting 3 changes history +38 [Ryan E. Tomlinson (3×)] | |||
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07:14 (cur | prev) +1 Ryan E. Tomlinson talk contribs | ||||
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06:33 (cur | prev) +14 Ryan E. Tomlinson talk contribs | ||||
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06:33 (cur | prev) +23 Ryan E. Tomlinson talk contribs | ||||
28 September 2023
| 18:01 | YAEL:Help diffhist −6 Zhengjia talk contribs (→Support) | ||||
| 14:49 | Upload log Dbar talk contribs uploaded File:ChAMP protocol v1.0 Freeze.pdf (ChAMP protocol, version 1.0.) | ||||
| 14:36 | CHIP:News diffhist −21 Gabor Balazsi talk contribs | ||||
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14:36 | (User creation log) [Yar (3×)] | |||
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14:36 User account Dbar talk contribs was created by Yar talk contribs and password was sent by email | ||||
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14:35 User account Srproulx talk contribs was created by Yar talk contribs and password was sent by email | ||||
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14:35 User account Perc3vall talk contribs was created by Yar talk contribs and password was sent by email | ||||
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11:29 | Schumer lab: Commonly used workflows 9 changes history +2,130 [Tododge (9×)] | |||
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11:29 (cur | prev) +174 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | ||||
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11:26 (cur | prev) +5 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | ||||
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11:25 (cur | prev) +363 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | |||
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10:51 (cur | prev) +157 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | ||||
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10:49 (cur | prev) +1,041 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | |||
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10:10 (cur | prev) −97 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | |||
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10:07 (cur | prev) +19 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | |||
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09:59 (cur | prev) +362 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | ||||
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09:55 (cur | prev) +106 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | ||||
27 September 2023
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16:40 | Schumer lab: Commonly used workflows 4 changes history +795 [Tododge (4×)] | |||
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16:40 (cur | prev) +68 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | |||
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16:28 (cur | prev) +39 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | ||||
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16:25 (cur | prev) +698 Tododge talk contribs (→Genome assembly from PacBio HiFi data) | ||||
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12:10 (cur | prev) −10 Tododge talk contribs (→Genome assembly with hifiasm - PacBio HiFi data) | ||||
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14:35 | Tomlinson:JCSchedule 2 changes history −9 [Ryan E. Tomlinson (2×)] | |||
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14:35 (cur | prev) −22 Ryan E. Tomlinson talk contribs | ||||
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09:12 (cur | prev) +13 Ryan E. Tomlinson talk contribs | ||||
26 September 2023
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18:44 | Hu:Publications 2 changes history +219 [Hugangqing (2×)] | |||
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18:44 (cur | prev) +149 Hugangqing talk contribs | ||||
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18:41 (cur | prev) +70 Hugangqing talk contribs | ||||
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17:08 | Hu 2 changes history +105 [Hugangqing (2×)] | |||
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17:08 (cur | prev) −1 Hugangqing talk contribs | ||||
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17:08 (cur | prev) +106 Hugangqing talk contribs | ||||
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15:10 | Park Lab :Publications 2 changes history +298 [Jeewoong Lee (2×)] | |||
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15:10 (cur | prev) 0 Jeewoong Lee talk contribs (→Publications (*†equal contribution)) | ||||
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15:10 (cur | prev) +298 Jeewoong Lee talk contribs (→Publications (*†equal contribution)) | ||||
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13:26 | Schumer lab: Commonly used workflows 3 changes history +319 [Tododge (3×)] | |||
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13:26 (cur | prev) −78 Tododge talk contribs (→Genome assembly with hifiasm - PacBio HiFi data) | ||||
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11:10 (cur | prev) +188 Tododge talk contribs (→Genome assembly with hifiasm - PacBio HiFi data) | ||||
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11:08 (cur | prev) +209 Tododge talk contribs (→Genome assembly with hifiasm - PacBio HiFi data) | ||||
| 12:31 | Renhao Li Lab:Publications diffhist +49 Renhao Li talk contribs (→2023) | ||||
| 10:03 | RAVE:VScode diffhist +1,023 Zhengjia talk contribs (→Configure R on vscode (server side)) | ||||
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08:44 | Tomlinson:JCSchedule 2 changes history +144 [Ryan E. Tomlinson (2×)] | |||
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08:44 (cur | prev) −1 Ryan E. Tomlinson talk contribs | ||||
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08:44 (cur | prev) +145 Ryan E. Tomlinson talk contribs | ||||
25 September 2023
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13:44 | Schumer lab: Commonly used workflows 2 changes history +3,268 [Tododge (2×)] | |||
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13:44 (cur | prev) +2,070 Tododge talk contribs (→Genome assembly with hifiasm - PacBio HiFi data) | ||||
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13:17 (cur | prev) +1,198 Tododge talk contribs (→Genome assembly with hifiasm - PacBio HiFi data) | |||
| 11:35 | YAEL:Install prerequisites diffhist +1 Michael S Beauchamp talk contribs (→5. Troubleshooting) | ||||
