HughesLab:JTK Cycle: Difference between revisions

HughesLab:JTK Cycle (view source)

168 bytes added , 19 February 2013

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 data sets and estimate their period length, phase, and amplitude.</p>
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-JTK_Cycle runs in [http://en.wikipedia.org/wiki/R_%28programming_language%29 R], a statistical language that can be downloaded [http://www.r-project.org/ here]. The scripts necessary to run JTK_Cycle are available as a .zip: [[Image:JTK_Cycle.zip]]. This compressed file also contains a User's Guide and several example data sets.</p>
+JTK_Cycle runs in [http://en.wikipedia.org/wiki/R_%28programming_language%29 R], a statistical language that can be downloaded [http://www.r-project.org/ here]. The scripts necessary to run JTK_Cycle are available as a .zip: [[Image:JTK_Cycle_(2-19-13).zip]]. This compressed file also contains a User's Guide and several example data sets.  One important note: this is version 2.1 which includes improvements in the accuracy of amplitude calculations as well as confidence intervals for amplitude.</p>
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 When publishing data analyzed by JTK_Cycle, please cite [http://www.ncbi.nlm.nih.gov/pubmed/20876817 Hughes et al. (2010) Journal of Biological Rhythms].  If you use the recently modified JTK_Cycle script to compare the confidence intervals of amplitude measurements, please also cite [http://www.ncbi.nlm.nih.gov/pubmed/22076133 Miyazaki et al. (2011) Plos ONE].