BIOL388/S19:Class Journal Week 11: Difference between revisions
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==[[User:Austindias|Austin Dias]] Reflection == | ==[[User:Austindias|Austin Dias]] Reflection == | ||
'''1. Discuss amongst yourselves whether or not the Tai et al (2007) journal club paper gives you enough information to perform such a simulation.''' | '''1. Discuss amongst yourselves whether or not the Tai et al (2007) journal club paper gives you enough information to perform such a simulation.''' | ||
The Tai et al (2007) paper does not provide enough information to perform an accurate simulation of steady state because we are unaware of the initial cell population and initial yeast concentration. | |||
'''2. What parameters are explicitly given?''' | '''2. What parameters are explicitly given?''' | ||
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'''3. Can you back any others out from the data tables?''' | '''3. Can you back any others out from the data tables?''' | ||
Table 1 provides dilution rates for each experimental set up. While Table 2 provides cell biomass and nutrient mass values. | Table 1 provides dilution rates for each experimental set up. While Table 2 provides cell biomass and nutrient mass values. | ||
'''4. To what in the model do the quantities in Table 1 correspond?''' | '''4. To what in the model do the quantities in Table 1 correspond?''' | ||
Table 1 corresponds to | |||
==[[User:EdwardRyanTalatala|Edward's Journal Reflection]]== | ==[[User:EdwardRyanTalatala|Edward's Journal Reflection]]== | ||
Revision as of 22:02, 10 April 2019
- Discuss amongst yourselves whether or not the Tai et al (2007) journal club paper gives you enough information to perform such a simulation.
- What parameters are explicitly given?
- Specific growth rate: 0.03 h−1
- Dilution rate (D) of 0.03 h−1
- Working volume of 1.0 L
- pH: Kept constant at 5.0
- Stirrer speed: 600 rpm
- Can you back any others out from the data tables?
- Table 2 shows the nutrient biomass for each condition.
- To what in the model do the quantities in Table 1 correspond?
- Table 1 provides the growth rate and dilution rates for each of the various environmental configurations.
Avalekander (talk) 19:49, 5 April 2019 (PDT)
- Discuss amongst yourselves whether or not the Tai et al (2007) journal club paper gives you enough information to perform such a simulation.
- What parameters are explicitly given?
- Can you back any others out from the data tables?
- To what in the model do the quantities in Table 1 correspond?
- Discuss amongst yourselves whether or not the Tai et al (2007) journal club paper gives you enough information to perform such a simulation.
- What parameters are explicitly given?
- Can you back any others out from the data tables?
- To what in the model do the quantities in Table 1 correspond?
Austin Dias Reflection
1. Discuss amongst yourselves whether or not the Tai et al (2007) journal club paper gives you enough information to perform such a simulation.
The Tai et al (2007) paper does not provide enough information to perform an accurate simulation of steady state because we are unaware of the initial cell population and initial yeast concentration.
2. What parameters are explicitly given?
The researchers only explicitly provide the dilution rate and the volume in the container. Searching back through their previous paper is necessary to find nutrient concentrations. The parameters that were explicitly stated are listed below:
- dilution rate = 0.03 h^-1
- volume in container = 1 L
- provide nutrient concentrations by referencing methods from previous study (Tai et al., 2005)
- glucose limited culture
- 5.0 g liter^1 (NH4)2SO4
- 3.0 g liter^1 KH2PO4
- 0.5 g liter^1 MgSO47H2O
- 25 g liter^1 glucose
- ammonia limited culture
- 0.65 g liter^1(NH4)2SO4
- 5.75 g liter^1 K2SO4
- 3.0 g liter^1 KH2PO4
- 0.5 g liter^1 MgSO47H2O
- 46 g liter^1 glucose
- glucose limited culture
3. Can you back any others out from the data tables?
Table 1 provides dilution rates for each experimental set up. While Table 2 provides cell biomass and nutrient mass values.
4. To what in the model do the quantities in Table 1 correspond?
Table 1 corresponds to
- Discuss amongst yourselves whether or not the Tai et al (2007) journal club paper gives you enough information to perform such a simulation.
- What parameters are explicitly given?
- Can you back any others out from the data tables?
- To what in the model do the quantities in Table 1 correspond?
