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• 14:42, 13 May 2022 Zhou.oliverfr talk contribs created page RAVE:fragility:fragility:input vieworiginalraweegdata (Created page with "1000px")
• 14:35, 13 May 2022 Zhou.oliverfr talk contribs created page File:View Original Raw EEG Data.png
• 14:35, 13 May 2022 Zhou.oliverfr talk contribs uploaded File:View Original Raw EEG Data.png
• 14:35, 13 May 2022 Zhou.oliverfr talk contribs created page File:Step 3 View Fragility.png
• 14:35, 13 May 2022 Zhou.oliverfr talk contribs uploaded File:Step 3 View Fragility.png
• 14:35, 13 May 2022 Zhou.oliverfr talk contribs created page File:Step 2 Generate Model.png
• 14:35, 13 May 2022 Zhou.oliverfr talk contribs uploaded File:Step 2 Generate Model.png
• 14:34, 13 May 2022 Zhou.oliverfr talk contribs created page File:Step 1 Process Patient.png
• 14:34, 13 May 2022 Zhou.oliverfr talk contribs uploaded File:Step 1 Process Patient.png
• 14:28, 13 May 2022 Zhou.oliverfr talk contribs created page RAVE:fragility:fragility:input recheckfiles (Created page with "The Refresh button under Re-check files is useful for if you are manually importing pt_info, adj_info, or f_info files into the module_data folder and want the module to recognize them.")
• 13:28, 13 May 2022 Zhou.oliverfr talk contribs created page RAVE:fragility:fragility:input step3viewfragility (Created page with "==Viewing Fragility== Once at least one [SubjectCode]_f_info_trial_# file has been generated, these trials will become available for selection under Step 3, View Fragility. #Seizure Trial(s) for Fragility Display. Choose which trial to view the fragility of. If multiple trials are selected, the fragility values will be averaged across those trials. #Select Electrode. Choose which electrodes to view the fragility of. Only loaded electrodes (the electrodes you selected whe...")
• 12:30, 13 May 2022 Zhou.oliverfr talk contribs created page RAVE:fragility:fragility:input step2generatemodel (Created page with "==Generating the Adjacency Array and Fragility Matrix== Step 2 on the left-hand side is to generate the Adjacency Array. This is the time-varying linear model of the EEG data that will be used to determine the neural fragility of each electrode in the patient. It is generated by using a least-squares algorithm to linearly fit the raw EEG data. The time-varying aspect of this linear model comes from the fact that the entire time course is split into many smaller time wind...")
• 12:28, 13 May 2022 Zhou.oliverfr talk contribs created page RAVE:fragility:fragility:input step1processpatient (Created page with "==Pre-Processing the Patient for Fragility== Step 1 on the left-hand side is to process the patient for the fragility module. I know you just did a bunch of pre-processing for the RAVE subject, but don't worry - this is very fast and is just to standardize and save some metadata in the patient files. There are two options to look at before you press the "Pre-process Patient" button: "Units of Recording", and "Halve Sampling Rate?" #Units of Recording: The Fragility modu...")
• 12:59, 29 April 2022 Zhou.oliverfr talk contribs uploaded a new version of File:Timewindows example.png
• 12:58, 29 April 2022 Zhou.oliverfr talk contribs created page File:Timewindows example.png (Example of time windows and time steps for RAVE fragility module.)
• 12:58, 29 April 2022 Zhou.oliverfr talk contribs uploaded File:Timewindows example.png (Example of time windows and time steps for RAVE fragility module.)
• 11:35, 29 April 2022 Zhou.oliverfr talk contribs created page Karas Lab:Fragility Module (Created page with "{{Karas_Lab}} <div style="padding: 8px; color: #000000; background-color: #ffffff; width: 900px; border: 2px solid #666666;"> =Processing Pipeline= ==Pre-RAVE processing== RAVE currently (as of December 2021) does not have integrated CT and MRI co-registration, so it is necessary to complete these steps separately. Our current pipeline uses FreeSurfer to reconstruct the pial surface and iELVis to coregister the images. The steps for this can be found at Beauchamp:B...")
• 13:21, 11 February 2022 Zhou.oliverfr talk contribs created page Karas Lab:Accessing the Server (Created page with "{{Karas Lab}} Preface: make sure you are connected to the UTMB VPN before doing any of these steps, or none of them will work. ==Screen Sharing (easy)== You can use the Screen Sharing app built into MacOS. Just enter the IP Address of the server and log in to the Karas Lab account. ==Remote file mounting== #Open finder. #Press Cmd + K, and enter smb://{IP address} in the Server Address. ==SSH through terminal== #Open terminal. #Type ssh karaslab@{IP address} #Enter t...")
• 13:17, 5 February 2022 Zhou.oliverfr talk contribs created page Karas Lab:RAVE Preprocess (Created page with "For extensive documentation on how to preprocess data in RAVE, visit RAVE:ravetutorials")
• 13:05, 4 February 2022 Zhou.oliverfr talk contribs created page File:Karas Lab Logo Small White.png
• 13:05, 4 February 2022 Zhou.oliverfr talk contribs uploaded File:Karas Lab Logo Small White.png
• 10:56, 4 February 2022 Zhou.oliverfr talk contribs created page File:Karas Lab Logo-transparent.png
• 10:56, 4 February 2022 Zhou.oliverfr talk contribs uploaded File:Karas Lab Logo-transparent.png
• 10:14, 16 December 2021 Zhou.oliverfr talk contribs created page Karas Lab:RAVE Module (Created page with "{{Karas Lab}}")
• 13:42, 10 December 2021 Zhou.oliverfr talk contribs created page Karas Lab:Lab Members (Created page with " 600px")
• 13:40, 10 December 2021 Zhou.oliverfr talk contribs created page File:KarasLab.jpeg
• 13:40, 10 December 2021 Zhou.oliverfr talk contribs uploaded File:KarasLab.jpeg
• 16:56, 7 December 2021 Zhou.oliverfr talk contribs created page Karas Lab:RAVE Electrode Localization (Created page with "{{Karas_Lab}} ==Pre-RAVE processing== RAVE currently (as of December 2021) does not have integrated CT and MRI co-registration, so it is necessary to complete these steps separately. Our current pipline uses FreeSurfer to reconstruct the pial surface and iELVis to coregister the images. The steps for this can be found at Beauchamp:BuffyElectrodeNotes, from Beauchamp:BuffyElectrodeNotes#Starting_Electrode_Localization to Beauchamp:BuffyElectrodeNotes#CT_Alignme...")
• 16:49, 7 December 2021 Zhou.oliverfr talk contribs created page Karas Lab:Lab Notebook (Created page with "==Notes on RAVE==")
• 16:40, 7 December 2021 Zhou.oliverfr talk contribs created page Template:Karas Lab (Created page with "150px <div style="padding: 10px; color: #ffffff; background-color: #000; width: 730px"> <center> <font face="trebuchet ms" style="color:#ffffff"> '''Home''' </font>        <font face="trebuchet ms" style="color:#ffffff"> '''Contact''' </font>        <font face="trebuchet ms" style="color:#ffffff"> '''Internal''' </font>...")
• 16:34, 7 December 2021 Zhou.oliverfr talk contribs created page Karas Lab:Contact (Created page with "{{Karas_Lab}} <div style="padding: 10px; width: 720px; border: 5px solid #000000;"> You can reach us at Karas Lab<br> 100 University Avenue<br> University of OpenWetWare<br> Nowhereville, MA 00000<br> </div> Category:Lab")
• 16:28, 7 December 2021 Zhou.oliverfr talk contribs created page Karas Lab (Created page with "150px <div style="padding: 10px; color: #ffffff; background-color: #000; width: 730px"> <center> <font face="trebuchet ms" style="color:#ffffff"> '''Home''' </font>        <font face="trebuchet ms" style="color:#ffffff"> '''Contact''' </font>        <font face="trebuchet ms" style="color:#ffffff"> '''Internal''' </font>...")
• 16:22, 7 December 2021 Zhou.oliverfr talk contribs created page User:Zhou.oliverfr (Created page with "Research Assistant for Karas Lab")