User contributions for Qlangdon
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7 November 2023
- 13:0813:08, 7 November 2023 diff hist +2 LDhelmet workflow No edit summary current
2 November 2023
- 10:1710:17, 2 November 2023 diff hist −1,515 Schumer lab: Commonly used programs No edit summary current
29 September 2023
- 13:0713:07, 29 September 2023 diff hist +200 Making alignments with cactus No edit summary current
- 13:0313:03, 29 September 2023 diff hist +90 Making alignments with cactus No edit summary
- 13:0113:01, 29 September 2023 diff hist +3,237 N Making alignments with cactus Created page with "To run Cactus you'll need your genomes. And an input file where the first line is a Newick style tree of the names of what you want to align, followed by lines that have a tab delimited name / path. The name must be unique and it will be what that genome is called in the alignment. The path is where that fasta is located. These are supposed to be softmasked genomes, so if you can do that before. Here's an example of aligning the Xbir_pacbio_v2023.1 genome with the X...."
- 12:5512:55, 29 September 2023 diff hist +4 Schumer lab: Commonly used workflows →Liftovers using cactus alignments
- 12:5412:54, 29 September 2023 diff hist +97 Schumer lab: Commonly used workflows →Liftovers using cactus alignments
6 September 2023
- 11:5711:57, 6 September 2023 diff hist +10 Schumer lab: Backing up raw data No edit summary
5 September 2023
- 12:2212:22, 5 September 2023 diff hist 0 N File:GlobusStep1.jpg No edit summary current
- 12:1912:19, 5 September 2023 diff hist +2,583 Schumer lab: Backing up raw data No edit summary
23 August 2023
8 June 2023
- 17:1317:13, 8 June 2023 diff hist +1,708 LDhelmet workflow →Steps to building a recombination map with LDhelmet
- 16:3516:35, 8 June 2023 diff hist +38 LDhelmet workflow →6. Running LD helmet
- 16:3416:34, 8 June 2023 diff hist −208 Schumer lab: Commonly used workflows →Post simulations population specific inference
- 16:2916:29, 8 June 2023 diff hist +80 Schumer lab: Commonly used workflows No edit summary
- 16:2716:27, 8 June 2023 diff hist +501 LDhelmet workflow →Steps to building a recombination map with LDhelmet
- 16:1416:14, 8 June 2023 diff hist +13,290 N LDhelmet workflow Building a recombination map with LDhelmet
- 15:3715:37, 8 June 2023 diff hist +22 Schumer lab: Commonly used workflows →Building a recombination map with LDhelmet
- 15:3215:32, 8 June 2023 diff hist +50 Schumer lab: Commonly used workflows No edit summary
- 15:3015:30, 8 June 2023 diff hist −376 Talk:Schumer lab: Commonly used workflows Blanked the page current Tag: Blanking
- 15:2815:28, 8 June 2023 diff hist +376 N Talk:Schumer lab: Commonly used workflows Building a recombination map with LDhelmet
2 August 2022
- 15:1315:13, 2 August 2022 diff hist −1 Schumer lab: Commonly used programs →Quick insight into species contributing to unknown hybrids
- 15:1315:13, 2 August 2022 diff hist +7 Schumer lab: Commonly used programs →Quick insight into species contributing to unknown hybrids
- 15:1215:12, 2 August 2022 diff hist +320 Schumer lab: Commonly used programs →Quick insight into species contributing to unknown hybrids
- 15:1115:11, 2 August 2022 diff hist +1,115 Schumer lab: Commonly used programs →Quick insight into species contributing to unknown hybrids sppIDer
- 14:5914:59, 2 August 2022 diff hist +75 Schumer lab: Commonly used programs →General use programs
- 14:5114:51, 2 August 2022 diff hist +1 Schumer lab: Commonly used workflows →Identifying minor parent deserts and islands
- 14:5114:51, 2 August 2022 diff hist +34 Schumer lab: Commonly used workflows →Identifying minor parent deserts and islands
- 14:5114:51, 2 August 2022 diff hist +36 Schumer lab: Commonly used workflows →Identifying minor parent deserts and islands
- 14:5014:50, 2 August 2022 diff hist −31 Schumer lab: Commonly used workflows →Identifying minor parent deserts and islands
- 14:4914:49, 2 August 2022 diff hist +1 Schumer lab: Commonly used workflows →Identifying minor parent deserts and islands
- 14:4914:49, 2 August 2022 diff hist +1,644 Schumer lab: Commonly used workflows →Identifying minor parent deserts and islands
- 13:2713:27, 2 August 2022 diff hist +168 Schumer lab: Commonly used workflows →Merging multiple ancestry tsv files run separately
- 13:2313:23, 2 August 2022 diff hist −3 Schumer lab: Commonly used scripts →Scripts to calculate hybrid index and makes ancestry plots post ancestryinfer
- 13:2113:21, 2 August 2022 diff hist +820 Schumer lab: Commonly used scripts →Scripts to average by site or in windows
- 11:4711:47, 2 August 2022 diff hist −1 Schumer lab: Where can I find commonly used files →Where can I find the X. birchmanni genome split into windows ? current
- 11:4611:46, 2 August 2022 diff hist +1 Schumer lab: Where can I find commonly used files →Where can I find the X. birchmanni genome split into windows ?
- 11:4611:46, 2 August 2022 diff hist +3 Schumer lab: Where can I find commonly used files →Where can I find the X. birchmanni genome split into windows ?
- 11:4611:46, 2 August 2022 diff hist +2 Schumer lab: Where can I find commonly used files →Where can I find the X. birchmanni genome split into windows ?
- 11:4511:45, 2 August 2022 diff hist +1,301 Schumer lab: Where can I find commonly used files No edit summary
- 11:1611:16, 2 August 2022 diff hist +295 Schumer lab: Processed files available on Oak No edit summary
13 December 2021
- 13:1513:15, 13 December 2021 diff hist +2,327 Schumer lab: Commonly used workflows →Demographic Inference with ABC
- 12:3112:31, 13 December 2021 diff hist +37 Schumer lab: Commonly used workflows No edit summary
- 12:0612:06, 13 December 2021 diff hist +1 Schumer lab: Important simulation tools →Simulations for ABC demographic inference with SLiM
- 12:0612:06, 13 December 2021 diff hist +452 Schumer lab: Important simulation tools →Simulating Admixture and Selection with SLiM
8 July 2021
- 14:3214:32, 8 July 2021 diff hist +817 m Schumer lab: Commonly used scripts →Scripts to summarize features in windows (i.e. coding, conserved, repetitive basepairs)
- 12:5612:56, 8 July 2021 diff hist +1 Schumer lab: Commonly used workflows →Ancestry tsv files to average ancestry in windows
- 12:5512:55, 8 July 2021 diff hist +279 m Schumer lab: Commonly used workflows →Ancestry tsv files to average ancestry in windows
4 June 2020
- 12:2912:29, 4 June 2020 diff hist +104 m Schumer lab: Commonly used workflows No edit summary
