Schumer lab:Lab Meetings

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Lab meeting/coffee hour schedule summer quarter 2022 (biweekly-ish schedule)

6/21 Lab meeting - Molly gives biannual lab climate survey report, followed by crafting

6/22 Coffee hour - Stepfanie gives practice plenary talk


6/28 Lab meeting - lab members give 5 minute research updates

6/22 Coffee hour - no coffee hour


7/5 Lab meeting - lab happy hour

7/6 Coffee hour - Molly hosts academic career chats/ ask me anything


7/12 Lab meeting - brief check in

7/13 Coffee hour - no coffee hour


7/19 Lab meeting - no lab meeting

7/20 Coffee hour - lab does sample ethanol change


8/2 Lab meeting - lab gives feedback on Shreya and Dan's paper on a 3-way hybrid zone

8/3 Coffee hour - TBD


8/16 Lab meeting - Anna Feller gives lab meeting

8/17 Coffee hour - lab gives feedback on Gabe's paper on a fixing the Xiphophorus phylogeny


9/2 Lab meeting - lab gives feedback on Tris's paper on lizard genome assemblies


9/6 Lab meeting - yearly lab-manual revision

9/7 Coffee hour - Ben Ruben gives coffee hour


9/13 Lab meeting - Roshni Patel gives lab meeting

9/14 Coffee hour - TBD


9/20 Lab meeting - TBD

9/21 Coffee hour - Carla Bautista gives coffee hour

Lab meeting/coffee hour schedule spring quarter 2022

3/29 Lab meeting - lab members discuss field trip, lab retreat, lab jobs

3/30 Coffee hour - no coffee hour


4/5 Lab meeting - Gabriel Birzu gives lab meeting on hybridization in bacteria

4/6 Coffee hour - Cheyenne leads discussion of Weiss et al. (2022) on melanoma in zebrafish


4/12 Lab meeting - no lab meeting

4/13 Coffee hour - Dan leads discussion of Stolle et al. (2022) on introgression of a colony structure supergene in ants


4/19 Lab meeting - lab gives feedback on Molly's NSF DEB proposal

4/20 Coffee hour - Gabe leads discussion of Cagan et al. (2022) on the relationship between mutation rates and lifespan in mammals


4/26 Lab meeting - no lab meeting

4/27 Coffee hour - Ken leads discussion of Bock et al. (2021) on hybridization in an invasive lizard


5/3 Lab meeting - lab members give 5 minute research updates

5/4 Coffee hour - Quinn leads discussion of Morrill et al. (2022) on ancestry-inclusive dog genomics


5/10 Lab meeting - lab discusses field trip plans

5/11 Lab retreat!


5/17 Lab meeting - lab discusses nanopore sequencing

5/18 Coffee hour - processing and reflection check in


5/24 Lab meeting - no lab meeting

5/25 Coffee hour - Stepfanie leads discussion of Weasel (2022) on race and evolutionary genomics.


5/31 Lab meeting - Alyssa Fortier gives lab meeting on balancing selection and primate MHCs

6/1 Coffee hour - Gabe's first year talk


6/6 Lab meeting - lab gives feedback on introgression primer draft

6/7 Lab meeting - Yuki Haba gives lab meeting

6/8 Coffee hour - Shreya gives practice Evolution talk


6/14 Lab meeting - lab gives feedback on Molly's NSF CAREER proposal

6/15 Coffee hour - Molly leads JC discussion

Lab meeting/coffee hour schedule winter quarter 2022

1/04 Lab meeting - lab members all give 5 minute research updates

1/07 Coffee hour - Ken brainstorms simulations


1/11 Lab meeting - Molly gives state of the lab update

1/14 Coffee hour - brainstorming & code debugging


1/18 Lab meeting - no lab meeting

1/21 Coffee hour - Ken leads discussion of Monroe et al. (2022) on mutation bias in Arabidopsis


1/25 Lab meeting - Wenhan Chang gives lab meeting on Drosophila gene evolution and hybrid incompatibilities

1/28 Coffee hour - Ombuds workshop


2/01 Lab meeting - Frank Chan gives lab meeting

2/04 Coffee hour - Leon Hilgers gives a talk


2/08 Lab meeting - Lab discusses climate in Eco-Evo field

2/11 Coffee hour - Lab reads SSE code of ethics proposal and provides feedback


2/15 Lab meeting - Lab gives 5 minute research updates, discuss upcoming fishroom inspection

2/18 Coffee hour - Andy and Tris lead discussion of Kolora et al. (2021) on genomics of Rockfish aging


2/22 Lab meeting - Arielle Fogel gives talk on baboon hybridization

2/25 Coffee hour - Bioinformatics coffee hour


3/01 Lab meeting - Marianna Karageorgi gives talk

3/04 Coffee hour - Lab gives feedback on Ben's mito paper revisions


Lab meeting/coffee hour schedule fall quarter 2021

9/21 Coffee hour - brainstorming & code debugging

9/22 Lab meeting - Dan gives a practice talk


9/28 Coffee hour - lab gives feedback on Shreya's NSF GRFP

9/29 Lab meeting - Gaston Jofre visits and discusses his swordtail hybrid zone research


10/05 Coffee hour - lab gives feedback on Tris's NSF GRFP

10/06 Lab meeting - no meeting


10/12 Coffee hour - lab gives feedback on Gabe's NSF GRFP

10/14 Lab meeting - lab gives feedback on Stepfanie's flicker hybrid zone manuscript


10/19 Coffee hour - discussion of lab & fish room jobs & organization

10/21 Lab meeting - Molly presents on a new hybrid incompatibility


10/26 Coffee hour - Dan leads discussion of Muralidhar et al.'s preprint on hybrid ancestry bundling

10/28 Lab meeting - lab members all give 5 minute research updates


11/02 Coffee hour - Cheyenne, Quinn, and Ben share wisdom on OAK/Sherlock/slurm

11/04 Lab meeting - lab gives feedback on Ken's stickleback hybrid fitness manuscript


11/09 Coffee hour - November Mexico trip planning

11/11 Lab meeting - Ethan Jewett from 23andMe presents


11/16 Coffee hour - brainstorming & code debugging

11/18 Lab meeting - Ken gives a practice talk


11/23 Coffee hour - lab reads Bernard Kim's recent Current Biology paper on Drosophila introgression

11/25 Lab meeting - Thanksgiving break [no lab meeting]


11/30 Coffee hour - Ben, Cheyenne, Dan, and Theresa give update on Mexico trip [great success!!!]

12/02 Lab meeting - Molly out of town [no lab meeting]


12/07 Coffee hour - lab members swap desks

12/09 Lab meeting - TBD


12/14 Coffee hour - Stepfanie gives a practice job talk

12/16 Lab meeting - lab members all give 5 minute research updates


Lab meeting Schedule Winter Quarter 2020

1/17 - General beginning of the quarter meeting/ state of the lab

1/24 - Molly at UCSC no lab meeting

1/31 - Ben lab meeting talk

2/7 - Quinn leads discussion of Palkopoulou et al. 2018 PNAS

2/14 - Nick Altemose visits the lab and gives lab meeting

2/21 - Quinn CEHG practice talk

2/28 - Molly at Hopkins no lab meeting

3/6 - [Grad student admissions]

3/13 - Sivan Yair visits the lab and gives lab meeting

3/20 - Alisa Sedghifar visits the lab and give lab meeting

3/27 -

Past lab meetings

9/20

Dani - intro to quartzy

Dani - zebrabase, waste tags


9/27

Molly - quick intro to available resources: box, sample inventory, wiki, slack

Go over fish & wet lab chores

Discuss upcoming inspection


10/4

Molly - Oak & depositing data, electronic lab notebooks

Bernard - SLiM


10/11


Cheyenne - short research update


10/18

Cheyenne - Sherlock

Discuss spotted caudal paper


10/25

Molly - AncestryHMM

Lab meeting computational topics

AncestryHMM

mixnmatch

github

SLiM

Journal Club Schedule

8/30 Molly Male Infertility Is Responsible for Nearly Half of the Extinction Observed in the Mouse Collaborative Cross

8/16 Dan Parallel introgression and selection on introduced alleles in a native species

8/9 Cheyenne - Adaptive introgression enables evolutionary rescue from extreme environmental pollution

8/2 Molly - Inferring the genetic architecture of expression variation from replicated high throughput allele-specific expression experiments

Journal Club paper ideas

Hybridization:

Introgression of regulatory alleles and a missense coding mutation drive plumage pattern diversity in the rock pigeon

Adaptive introgression underlies polymorphic seasonal camouflage in snowshoe hares

Male Infertility Is Responsible for Nearly Half of the Extinction Observed in the Mouse Collaborative Cross

Neanderthal-Denisovan ancestors interbred with a distantly-related hominin

Adaptive introgression enables evolutionary rescue from extreme environmental pollution

On the distribution of tract lengths during adaptive introgression


Recombination:

Modulation of Prdm9-controlled meiotic chromosome asynapsis overrides hybrid sterility in mice

PRDM9 diversity at fine geographical scale reveals contrasting evolutionary patterns and functional constraints in natural populations of house mice