BioMicroCenter:DataManagement
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Data Management
The data managers at the BioMicro center are responsible for the organization and storage of scientific data. We do this using NExtSEEK, a FAIR-compliant data management system, allowing for the data to be findable, accessible, interoperable, and reusable, ensuring the quality of the metadata being stored. NextSEEK is one of the only FAIR-compliant storage systems and is built to handle a variety of types of scientific data types, a contrast to other commercial databases that are built for one specific data type. Currently, we are working with three different projects comprising of numerous different labs; the MIT SuperFund Research Program (SRP), the Metastasis Network (MetNet), and IMPAcTB. The data managers at the BioMicro Center work with researchers to submit data in real time, making the data deposition and submission for publication process as simple as possible.
More Information
To learn more about what we do and how we implement FAIR compliance, go here.
For those interested in learning more about NExtSEEK and FAIRDOMHub, navigate to this page.
For instructions on how to use NExtSEEK, go to this page.
| Project | Sample amount |
|---|---|
| IMPAcTB | 33,214 |
| MetNet | 1,191 |
| SRP | 20,347 |
| Experimental type | Number of samples | Data type | Number of samples | Analysis type | Number of samples |
|---|---|---|---|---|---|
| Antibodies | 500 | ELISA assay | 1 | CT scan | 1 |
| Antibody Panel | 27 | Atmosphere | 2 | Single Cell Clustering | 3 |
| Bacteria | 427 | Sequencing | 1112 | Single Cell Expression | 311 |
| Tissue | 35317 | Compensation FCS files | 531 | Flow Cytometry | 9 |
| Cell | 596 | File | 3 | Functional Profile Clustering | 1 |
| Chemical | 53 | Flow Cytometry | 2840 | Images | 180 |
| DNA libraries | 1404 | GPT Assay | 120 | Luminex | 1 |
| Gas | 3 | Images | 2129 | Sequencing | 1 |
| Patient Visit | 6208 | Luminex | 10 | Mass Spectrometry | 24 |
| Location | 3 | Microbial Load | 2 | NMR Spectroscopy | 13 |
| Lysate | 13 | Mass Spectrometry | 25 | Cancer Cell Extravasation | 7 |
| Mouse | 2494 | Sensor | 13 | Permeability | 13 |
| Non-Human Primates | 454 | NMR Spectroscopy | 45 | Clot Modeling | 4 |
| Organ on Chip | 29 | Absorption and Emission Spectroscopy | 47 | Genome Alignment | 32 |
| Patient | 231 | Crystallography | 9 | Absorption and Emission Spectroscopy | 7 |
| RNA Libraries | 144 | Electron Paramagnetic Resonance | 1 | High Resolution Mutational Spectra | 45 |
| X-Ray Photoelectron Spectroscopy | 1 |
