Registry of Standard Biological Models/Basic Component Models: Difference between revisions
From OpenWetWare
Jump to navigationJump to search
No edit summary |
mNo edit summary |
||
| Line 3: | Line 3: | ||
*Building blocks: | *Building blocks: | ||
**[[Registry of Standard Biological Models/Basic_Component_Models/BioBrick Environment|BioBrick Environment]] | **[[Registry of Standard Biological Models/Basic_Component_Models/BioBrick Environment|BioBrick Environment]] | ||
** [[Registry of Standard Biological Models/Basic_Component_Models/Constitutive Promoter|Constitutive Promoter]] | ** [[Registry of Standard Biological Models/Basic_Component_Models/Constitutive Promoter|Constitutive Promoter]] | ||
** [[Registry of Standard Biological Models/Basic_Component_Models/Activated Promoter|Activated Promoter]] | ** [[Registry of Standard Biological Models/Basic_Component_Models/Activated Promoter|Activated Promoter]] | ||
Revision as of 16:18, 8 September 2006
Here is a list of basic components available in the DNA Registry, each link intends to illustrate different modeling approaches and CellML descriptions:
- Building blocks:
- attempt to fuse RBS and mRNA concepts together. it could show a more universal interface, equivalent to the promoter_RBS_coupled
- Gene expression modeling (using the IMPORT of the previously defined building blocks):
- mRNA and protein full dynamic modeling
- Constitutive_mRNA_Protein_Expression_Dynamic -> ConstitutivePromoter + mRNA + RBS + Protein
- Activated_mRNA_Protein_Expression_Dynamic -> ActivatedPromoter + mRNA + RBS + Protein
- Repressed_mRNA_Protein_Expression_Dynamic -> RepressedPromoter + mRNA + RBS + Protein
- Protein dynamic modeling using quasi steady state approx on mRNA
- Constitutive_Protein_Expression_Dynamic -> ConstitutivePromoter_RBS_Coupled + Protein
- Activated_Protein_Expression_Dynamic -> ActivatedPromoter_RBS_Coupled + Protein
- Repressed_Protein_Expression_Dynamic -> RepressedPromoter_RBS_Coupled + Protein
- mRNA and protein full dynamic modeling
