User contributions for Michael Schneider

7 August 2008

• 08:2108:21, 7 August 2008 diff hist +184 Nm MichaelsSNoteBook/2008-8-7 New page: == Correlation Stuff == 0. RMSD 1. Rotamericity 2. Chi1 recov (Procede) 3. Energy (Procede) 4. Chi1 recov (Rosetta) 5. Energy (Rosetta) 6. Energy Design (Rosetta) 7. SeqRecov (Rosetta) current
• 08:1908:19, 7 August 2008 diff hist −2 User:Michael Schneider No edit summary current
• 08:1808:18, 7 August 2008 diff hist 0 User:Michael Schneider No edit summary

17 July 2008

• 22:0222:02, 17 July 2008 diff hist +424 N MichaelsSNoteBook/2008-7-17 New page: == Last Meeting with Amy == Figure 1 Add Labels for Avg and Best (upper left, like a legend) Figure 2 Repack energies: Minimized (E2-100) Procede panel (a) and Rosetta panel (b) repac... current

10 July 2008

• 16:2716:27, 10 July 2008 diff hist +339 N MichaelsSNoteBook/2008-7-10 New page: Figures to make: Figure 1 A) Rotamericity (NMR ave - X-ray diff) B) Repacking (NMR ave - X-ray diff) C) Rosetta cluster energy repacking D) Procede cluster energy (stre) repacking Fig... current

8 May 2008

• 20:5620:56, 8 May 2008 diff hist +1,261 N MichaelsSNoteBook/2008-5-8 New page: =05/08/08= Today was kinda good :). Made plots for the energy decomposiotion for the fixed backbone design case. Both plots for no min and E2 100 backbone mit were made. Seems, that th... current

6 May 2008

• 16:0316:03, 6 May 2008 diff hist +947 N MichaelsSNoteBook/2008-5-6 New page: == evaluation script == rewritten the evalutation script. outputs now the following files: "rosettaDesignEnergyDecompositionAllEnergies_" + xrayFileKey + "_" + nmrFileKey + ".txt" i... current

18 April 2008

• 22:5822:58, 18 April 2008 diff hist −5 MichaelsSNoteBook/2008-4-18 →SCADS current
• 22:5722:57, 18 April 2008 diff hist −16 MichaelsSNoteBook/2008-4-18 →rosetta design
• 22:5722:57, 18 April 2008 diff hist +1,430 N MichaelsSNoteBook/2008-4-18 A

9 April 2008

• 23:0223:02, 9 April 2008 diff hist +914 N MichaelsSNoteBook/2008-4-9 New page: ==04/09/08== ... done something ^^. Read the interesting crystallography review, maybe something that can be cited. Also startet the calculations of structures with core residue fract... current

7 April 2008

• 23:0423:04, 7 April 2008 diff hist +425 N MichaelsSNoteBook/2008-4-7 New page: == 04/07/08 == So focucing works. I got through to papers, which are definetly worth citing, showing that NMR and X-ray are complementary methods and it is often not possible to get NMR sp... current

4 April 2008

• 18:2218:22, 4 April 2008 diff hist +680 N MichaelsSNoteBook/2008-4-4 New page: ==04/04/08== Okay, time to geht on full throttle !!! I guess I kinda in the writing process now. Plan till monday night: Read papers, on the bus, at the tournament, sunday at home, mon... current

3 April 2008

• 22:5822:58, 3 April 2008 diff hist +982 N MichaelsSNoteBook/2008-4-3 New page: ==04/03/2008== Not so much done today ... I really should motivate myself a little bid more :). Quality scores by just using phi-psi in procheck increases the overall z-score slightly. ... current

1 April 2008

• 22:3122:31, 1 April 2008 diff hist +41 MichaelsSNoteBook/2008-4-1 No edit summary current
• 22:3022:30, 1 April 2008 diff hist +1,130 N MichaelsSNoteBook/2008-4-1 New page: ==April 1st 2008== As usuall, meeting with Amy was pretty helpful. I have a couple of new tasks for the next couple of days. I. Search in the liturature for every X-ray vs. NMR results...

21 March 2008

• 23:1223:12, 21 March 2008 diff hist +918 N MichaelsSNoteBook/2008-3-21 New page: == Collecting results and thing about several ways of plotting == The scatter plots, like Karl suggested, seem to be very helpful. Since we need no normalization for our data that has the... current

13 March 2008

• 22:0622:06, 13 March 2008 diff hist +1,282 N MichaelsSNoteBook/2008-3-13 New page: == Thursday 03/13/08 == Not so much done today ... Finally I moved to my new desk ^^. Ive collected the data of the last 5 structure pairs, so far no obvious errors so I can start the... current

12 March 2008

• 22:5122:51, 12 March 2008 diff hist +8 MichaelsSNoteBook/2008-3-12 No edit summary current
• 22:4922:49, 12 March 2008 diff hist −2 MichaelsSNoteBook/2008-3-12 No edit summary
• 22:4722:47, 12 March 2008 diff hist +3 MichaelsSNoteBook/2008-3-12 No edit summary
• 22:4722:47, 12 March 2008 diff hist +2,094 N MichaelsSNoteBook/2008-3-12 New page: ===Wednesday, 03/12/08=== Yay, my own online lab notebook (second tryout ^^). After several tryouts to keep a notebook by (handwritten or typed), it turned out that I wasn`t able to mak...
• 21:0721:07, 12 March 2008 diff hist −28 User:Michael Schneider No edit summary
• 18:5818:58, 12 March 2008 diff hist +69 IGEM:MIT/2006/MichaelsSNoteBook/2008-3-12 →Wednesday, 03/12/08 current
• 18:5718:57, 12 March 2008 diff hist +916 IGEM:MIT/2006/MichaelsSNoteBook/2008-3-12 →Wednesday, 03/12/08
• 18:5018:50, 12 March 2008 diff hist +187 N IGEM:MIT/2006/MichaelsSNoteBook/2008-3-12 New page: === Wednesday, 03/12/08 === Jay, my personal online wiki notebook :). I think this that this is the most appropriate way to handle my thoughts and write down what I did during the day.
• 18:4818:48, 12 March 2008 diff hist 0 User:Michael Schneider No edit summary
• 18:4618:46, 12 March 2008 diff hist +98 User:Michael Schneider No edit summary
• 18:4518:45, 12 March 2008 diff hist +274 User:Michael Schneider No edit summary
• 18:4518:45, 12 March 2008 diff hist −263 Calendar:OpenWetWare No edit summary current
• 18:4418:44, 12 March 2008 diff hist 0 Calendar:OpenWetWare No edit summary
• 18:4318:43, 12 March 2008 diff hist +265 Calendar:OpenWetWare No edit summary
• 16:4716:47, 12 March 2008 diff hist +3,215 N User talk:Michael Schneider No edit summary current
• 16:4716:47, 12 March 2008 diff hist +1,152 N User:Michael Schneider No edit summary