Imperial College/Courses/Spring2008/Synthetic Biology/Computer Modelling Practicals/CellDesigner Tutorial/Reactions

From OpenWetWare
Jump to navigationJump to search
Synthetic Biology (Spring2008): Computer Modelling Practicals

Home        CellDesigner Tutorial        Practical 1        Practical 2        Practical 3        Schedule        Back to Synthetic Biology Course       

<html> <body> <!-- Start of StatCounter Code --> <script type="text/javascript"> var sc_project=3315875; var sc_invisible=0; var sc_partition=36; var sc_security="779debd0"; </script> <script type="text/javascript" src="http://www.statcounter.com/counter/counter_xhtml.js"></script><noscript><div class="statcounter"><a class="statcounter" href="http://www.statcounter.com/"><img class="statcounter" src="http://c37.statcounter.com/3315875/0/779debd0/0/" alt="web metrics" /></a></div></noscript> <!-- End of StatCounter Code --> </body> </html>

CellDesigner Tutorial



CellDesigner: Reactions

Overview

CellDesigner Top Menu

  • Reactions represents state transition of the connected Species, for example, biochemical reactions, interaction between proteins, and regulatory relations between genes.
  • Each biochemical reaction as a specific symbol(see figure).

CellDesigner Reaction Symbols

Functions related to compounds

  • Create a new reaction: Select the approriate transition icon. Select 'source' compound, and then select 'Destination' compound. A transition is created.
  • Delete a reaction: Select the reaction. Menu: Edit --> Delete.
  • Edit a reaction : Double click a Reaction, click and change anything in the dialog box, and then, see what is changed after click "Apply" button.


Resources

Retrieved from "https://openwetware.org/mediawiki/index.php?title=Imperial_College/Courses/Spring2008/Synthetic_Biology/Computer_Modelling_Practicals/CellDesigner_Tutorial/Reactions&oldid=178348"