Escherichia coli
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General pages
- Standard E. coli Strain for BioBricks
- E. coli genotypes
- E. coli restriction-modification system
- Titratable control of pBAD and lac promoters in individual E. coli cells
- Bacterial artificial chromosomes
- Recombineering
- Escherichia coli/Knockouts
- F plasmids
- Transposable elements
- Endy:High-efficiency electroporation
- Escherichia coli/Codon usage
- Escherichia coli/Vectors
- Escherichia coli/Nomenclature & Abbreviations
- Escherichia coli/Methylation
- Klapperich Lab:Streaking bacteria on Agar plate
- Moore:Working with coli
- PSC101
- P15A
- ColE1
- Lane:MagneticPlasmidPrep
- Barboza's:Preparing LB agar plates
- Preparing LB Agar plates
- Montclare:Protocol Preparation of Chemically Competent E.coli Cells
Protocols
- Preparing chemically competent cells
- Electrocompetent cells
- Miniprep
- Electroporation
- Colony PCR
- Knight:Colony PCR
- Endy:Colony PCR
- Bacterial cell culture
- Endy:E. coli Western Blot
- Endy:STN Chemostat Protocol
- Beta-Galactosidase Assay (A better Miller)
- Knight:Preparing electrocompetent cells
- Miniprep/Qiagen kit
- Miniprep/Kit-free high-throughput protocol
- Transforming chemically competent cells
- Bacterial transformation
- Making a long term stock of bacteria
- P1vir phage transduction
- Preparing chemically competent cells (Inoue)
- Transforming chemically competent cells (Inoue)
- One step 'miniprep' method for the isolation of plasmid DNA
- TOP10 chemically competent cells
- Miniprep/GET buffer
- Knight:Electroporation
- Belcher/Knight: Electrocompetent Cells
- Lory:Quick transformant screen
- Seth:Quick Transformant Screen
- Sauer:Lysing E. coli with Lysozymes
- Maxiprep of plasmid DNA from E. coli
- Recombineering/Lambda red-mediated gene replacement
- Knight:DNA Spots
- Knight:Miniprep low copy plasmids
- Knight:Beta-galactosidase assay
- Knight:Beta-galactosidase assay/96 well format
- ChIP-Chip E. coli
- Engineering BioBrick vectors from BioBrick parts/Colony PCR
- Knight:Beta-galactosidase assay/Fluorescence
- Cell counting/plating
- Cell and tissue lysis hub
- Knight:Preparing stabs
- Duffy:LIC Cloning
- Cell cycle analysis
- Huang: Agarose Slides for Imaging
- In-fusion biobrick assembly
- Richard Lab:Electroporation of E. coli
- Richard Lab:Preparing electrocompetent cells
- Erman's Lab:DNA Miniprep with Alkaline Lysis
- Miniprep/TENS miniprep
- McClean:Competent Cells
- Gill:Rapid bacterial DNA prep
Materials
- Knight:M9 supplemented media
- TSS
- Neidhardt EZ Rich Defined
- M9 medium
- M9 medium/supplemented
- M9 medium/minimal
- M9 medium/with agar
- Endy:M9 media/supplemented
- Escherichia coli RNA polymerase
- Streptomyces:Other Bits/Antibiotic and Resistance Marker Information
- Cell and tissue lysis hub
- PTXB1
Notes
- In an Escherichia coli cell, 1 molecule per cell is approximately equal to 1nM.
Resources
- Escherichia coli statistics by Institute for Biomolecular Design
- Several tables describing statistical data on E. coli compiled from several sources.
- Physiology of the Bacterial Cell by Neidhardt, Ingraham and Schaechter
- Reference text on bacterial cell physiology.
- EcoSal by ASM Press
- An incomplete web version of the publication Escherichia coli and Salmonella: Cellular and Molecular Biology. [Subscription required]
- EcoGene
- Database of all E. coli genes and sequences
- Ecocyc
- Comprehensive biochemical pathway and gene function site for E. coli
