DNA extraction - Salting Out: Difference between revisions

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==Procedure==
==Procedure==
Add 5μL Proteinase K to each mL of Digestion Buffer
#Add 5μL Proteinase K to each mL of Digestion Buffer
Homogenise (or simply place) tissue in solution
#Homogenise (or simply place) tissue in solution
Incubate at 55°C for 1 hour to overnight
#Incubate at 55°C for 1 hour to overnight
 
#Centrifuge at maximum speed in a benchtop centrifuge for 2 minutes
Centrifuge at maximum speed in a benchtop centrifuge for 2 minutes
#Transfer supernatant into a new tube  
Transfer supernatant into a new tube  
#Add 1/10 volume of Sodium Acetate 3M (pH5.2)
Add 1/10 volume of Sodium Acetate 3M (pH5.2)
#Invert to mix and incubate at -20°C for ~30 minutes
Invert to mix and incubate at -20°C for ~30 minutes
#Centrifuge (preferably at 4°C) at maximum speed in a benchtop centrifuge for 20 minutes
Centrifuge (preferably at 4°C) at maximum speed in a benchtop centrifuge for 20 minutes
#Transfer supernatant to a new tube
Transfer supernatant to a new tube
#Add >2 volumes of 98% ethanol
Add >2 volumes of 98% ethanol
#Invert to mix and incubate at -20°C for 30 minutes
Invert to mix and incubate at -20°C for 30 minutes
#Centrifuge (preferably at 4°C) at maximum speed in a benchtop centrifuge for 20 minutes
Centrifuge (preferably at 4°C) at maximum speed in a benchtop centrifuge for 20 minutes
#Wash pellet with 70% ethanol, dry and resuspend in water or TE
Wash pellet with 70% ethanol, dry and resuspend in water or TE


==Critical steps==
==Critical steps==
After adding sodium acetate and centrifuging be careful not to transfer any of the white solid (SDS) into the fresh tube
#After adding sodium acetate and centrifuging be careful not to transfer any of the white solid (SDS) into the fresh tube
 
#Ensure to dry the pelletted DNA completely before attempting to resuspend
Ensure to dry the pelletted DNA completely before attempting to resuspend


==Troubleshooting==
==Troubleshooting==


==Notes==
==Notes==
This protocol has evolved with me and I am sure many others, please share your optimisations.
#This protocol has evolved with me and I am sure many others, please share your optimisations.
 
#You may wish to kill the Proteinase K (95°C, 10 minutes) after the extraction though if you are proceding straight to PCR (and don't leave your reactions sitting around before thermal cycling) the denaturation step will take care of that
You may wish to kill the Proteinase K (95°C, 10 minutes) after the extraction though if you are proceding straight to PCR (and don't leave your reactions sitting around before thermal cycling) the denaturation step will take care of that


==Acknowledgments==
==Acknowledgments==
 
#Damien Broderick from Queensland Depaqrtment of Primary Industries and Fisheries supplied me with his version of this protocol to start me off.
 
Damien Broderick from Queensland Depaqrtment of Primary Industries and Fisheries supplied me with his version of this protocol to start me off.


==References==
==References==
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