Uploads by Jenna L Morgan
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This special page shows all uploaded files.
| Date | Name | Thumbnail | Size | Description |
|---|---|---|---|---|
| 09:16, 11 June 2009 | Cox.NAST.aligned (file) |  |
5 MB | NAST-aligned sequences from the Cox and Gilmore paper. |
| 09:14, 11 June 2009 | Corby.NAST.aligned.fasta (file) | |
5.42 MB | NAST-aligned sequences from the Corby-Harris paper. |
| 09:07, 11 June 2009 | May09.trans.xls (file) | |
491 KB | This file maps the JGI clone IDs to our sample IDs. |
| 08:55, 11 June 2009 | Fly.merged.fasta (file) | |
7.23 MB | Each half was aligned using the NAST aligner and then both halves were concatenated. There is a reference sequence in there (called testseq) that was used to decide where to end the left half and begin the right half before concatenating. |
| 08:02, 11 June 2009 | Fly.contigs (file) | |
2.96 MB | These are the reads that assembled into complete clones using the JGI's 16S pipeline (genelib). |
| 08:00, 11 June 2009 | Fly.frags (file) | |
4.77 MB | These are the quality-trimmed reads that did not have enough overlap to assemble (thus "frags"). |
| 07:53, 11 June 2009 | Fly.frags.right (file) | |
2.39 MB | *These are the quality-trimmed reads that did not have enough overlap to assemble (thus "frags") and had a significant blast hit to the "right" side of a reference 16S sequence. |
| 07:51, 11 June 2009 | Fly.frags.left (file) | |
2.23 MB | These are the quality-trimmed reads that did not have enough overlap to assemble (thus "frags") and had a significant blast hit to the "left" side of a reference 16S sequence. |
| 11:35, 20 April 2009 | Classifications All NAST.Bchimera.fasta28223.xls (file) | |
42 KB | putative chimeric sequences |
| 11:34, 20 April 2009 | Classifications All NAST.Bambig.fasta27959.xls (file) | |
6 KB | sub-threshhold chimeric sequences |
| 11:32, 20 April 2009 | Classifications All NAST.Bclean.fasta30593.xls (file) | |
881 KB | taxonomy assignments for the 6321 clean sequences |
| 19:20, 19 April 2009 | SurveySequencedTable-1.xls (file) | |
27 KB | SurveySequencedTable.xls, updated by Jenna April 19th |
| 18:44, 19 April 2009 | All.good.gz (file) | |
2.48 MB | This is the NAST-generated fasta-formatted alignment of all sequences deemed to be clean by the chimera checker. Sub-threshhold (44) and putative (291) chimeras have been removed. |
| 18:34, 19 April 2009 | All NAST Bel job17274.tgz (file) | |
2.68 MB | Chimera check results. This includes 4 documents: 1. An excel spreadsheet with statistics and notes summarizing chimera check results. 2. A fasta file with 44 ambiguous (sub-threshhold) chimeric sequences. 3. A fasta file with 291 putative chimeric sequen |
| 22:50, 14 April 2009 | All.fasta.gz (file) | |
1.7 MB | |
| 16:38, 26 January 2009 | MetaSim long.pdf (file) |  |
15.02 MB | This is an older, longer version of the presentation that gave. It should provide a better idea of the experimental design than the 5-minute version. I will supplement it with new results based on additional data within the next week. |
| 17:52, 13 January 2009 | Chromatogram.jpg (file) |  |
182 KB |
