User contributions for Jenna L Morgan

11 June 2009

• 16:1916:19, 11 June 2009 diff hist +6 Drosophila 16S Paper No edit summary current
• 16:1616:16, 11 June 2009 diff hist +174 Data Files →Sequence files
• 16:1616:16, 11 June 2009 diff hist +54 N File:Cox.NAST.aligned NAST-aligned sequences from the Cox and Gilmore paper. current
• 16:1416:14, 11 June 2009 diff hist +51 N File:Corby.NAST.aligned.fasta NAST-aligned sequences from the Corby-Harris paper. current
• 16:0816:08, 11 June 2009 diff hist +98 Data Files →Environment File
• 16:0716:07, 11 June 2009 diff hist +51 N File:May09.trans.xls This file maps the JGI clone IDs to our sample IDs. current
• 16:0116:01, 11 June 2009 diff hist +432 Data Files →Alignment
• 16:0016:00, 11 June 2009 diff hist −400 Data Files →Sequence files
• 16:0016:00, 11 June 2009 diff hist +129 Data Files →Alignment
• 15:5915:59, 11 June 2009 diff hist +32 Data Files →Taxonomy Assignments
• 15:5815:58, 11 June 2009 diff hist +738 Data Files →Sequence files
• 15:5515:55, 11 June 2009 diff hist +238 N File:Fly.merged.fasta Each half was aligned using the NAST aligner and then both halves were concatenated. There is a reference sequence in there (called testseq) that was used to decide where to end the left half and begin the right half before concatenating. current
• 15:0215:02, 11 June 2009 diff hist +95 N File:Fly.contigs These are the reads that assembled into complete clones using the JGI's 16S pipeline (genelib). current
• 15:0015:00, 11 June 2009 diff hist 0 File:Fly.frags uploaded a new version of "Image:Fly.frags": These are the quality-trimmed reads that did not have enough overlap to assemble (thus "frags"). current
• 14:5914:59, 11 June 2009 diff hist +96 N File:Fly.frags These are the quality-trimmed reads that did not have enough overlap to assemble (thus "frags").
• 14:5314:53, 11 June 2009 diff hist +177 N File:Fly.frags.right *These are the quality-trimmed reads that did not have enough overlap to assemble (thus "frags") and had a significant blast hit to the "right" side of a reference 16S sequence. current
• 14:5114:51, 11 June 2009 diff hist +175 N File:Fly.frags.left These are the quality-trimmed reads that did not have enough overlap to assemble (thus "frags") and had a significant blast hit to the "left" side of a reference 16S sequence. current

16 May 2009

• 05:4105:41, 16 May 2009 diff hist +521 Drosophila 16S Paper →Technical Questions for Thought/Discussion

23 April 2009

• 22:3822:38, 23 April 2009 diff hist +430 Drosophila 16S Paper No edit summary
• 22:3022:30, 23 April 2009 diff hist +753 Drosophila 16S Paper →Technical Questions for Thought/Discussion
• 22:0622:06, 23 April 2009 diff hist +6 m Drosophila 16S Paper →Technical Questions for Thought/Discussion
• 22:0222:02, 23 April 2009 diff hist +1,321 Drosophila 16S Paper →Technical Questions for Thought/Discussion
• 17:1317:13, 23 April 2009 diff hist −7 Drosophila 16S Paper →Table of all Samples Sequenced
• 17:1217:12, 23 April 2009 diff hist +260 m Drosophila 16S Paper →Table of all Samples Sequenced
• 17:0717:07, 23 April 2009 diff hist 0 m Drosophila 16S Paper →Technical Questions for Thought/Discussion

22 April 2009

• 19:4419:44, 22 April 2009 diff hist −33 m ISEEM:Who We Are →Collaborators
• 19:0719:07, 22 April 2009 diff hist +8 ISEEM:Who We Are →Collaborators

20 April 2009

• 18:4718:47, 20 April 2009 diff hist +67 m Drosophila 16S Paper →Technical Questions for Thought/Discussion
• 18:4618:46, 20 April 2009 diff hist +359 Drosophila 16S Paper →Technical Questions for Thought/Discussion
• 18:3918:39, 20 April 2009 diff hist −305 Jenna No edit summary current
• 18:3718:37, 20 April 2009 diff hist +257 Data Files →Taxonomy Assignments
• 18:3518:35, 20 April 2009 diff hist +27 N File:Classifications All NAST.Bchimera.fasta28223.xls putative chimeric sequences current
• 18:3418:34, 20 April 2009 diff hist +33 N File:Classifications All NAST.Bambig.fasta27959.xls sub-threshhold chimeric sequences current
• 18:3218:32, 20 April 2009 diff hist +49 N File:Classifications All NAST.Bclean.fasta30593.xls taxonomy assignments for the 6321 clean sequences current
• 18:3118:31, 20 April 2009 diff hist +174 Data Files No edit summary
• 18:2818:28, 20 April 2009 diff hist +18 Drosophila 16S Paper No edit summary
• 07:5607:56, 20 April 2009 diff hist +3 m Drosophila 16S Paper →Table of all Samples Sequenced
• 07:5507:55, 20 April 2009 diff hist −19 Drosophila 16S Paper →Example of Replication
• 07:5507:55, 20 April 2009 diff hist +124 Drosophila 16S Paper →Example of Replication
• 07:4707:47, 20 April 2009 diff hist +73 Drosophila 16S Paper →Table of all Samples Sequenced
• 02:5602:56, 20 April 2009 diff hist +1,126 Drosophila 16S Paper →Example of Replication
• 02:3102:31, 20 April 2009 diff hist +69 Drosophila 16S Paper →Table of all Samples Sequenced
• 02:3002:30, 20 April 2009 diff hist −32 Jenna No edit summary
• 02:2502:25, 20 April 2009 diff hist +210 Drosophila 16S Paper →Table of all Samples Sequenced
• 02:2002:20, 20 April 2009 diff hist +53 N File:SurveySequencedTable-1.xls SurveySequencedTable.xls, updated by Jenna April 19th current
• 02:1902:19, 20 April 2009 diff hist +603 Drosophila 16S Paper →Table of all Samples Sequenced
• 01:5301:53, 20 April 2009 diff hist +84 Drosophila 16S Paper →Table of all Samples Sequenced
• 01:4701:47, 20 April 2009 diff hist +167 Drosophila 16S Paper →Table of all Samples Sequenced
• 01:4401:44, 20 April 2009 diff hist 0 File:All.good.gz uploaded a new version of "Image:All.good.gz": This is the NAST-generated fasta-formatted alignment of all sequences deemed to be clean by the chimera checker. Sub-threshhold (44) and putative (291) chimeras have been removed. current
• 01:4001:40, 20 April 2009 diff hist +129 Data Files No edit summary