Main public logs

Combined display of all available logs of OpenWetWare. You can narrow down the view by selecting a log type, the username (case-sensitive), or the affected page (also case-sensitive).

• 16:16, 11 June 2009 Jenna L Morgan talk contribs uploaded File:Cox.NAST.aligned (NAST-aligned sequences from the Cox and Gilmore paper.)
• 16:14, 11 June 2009 Jenna L Morgan talk contribs uploaded File:Corby.NAST.aligned.fasta (NAST-aligned sequences from the Corby-Harris paper.)
• 16:07, 11 June 2009 Jenna L Morgan talk contribs uploaded File:May09.trans.xls (This file maps the JGI clone IDs to our sample IDs.)
• 15:55, 11 June 2009 Jenna L Morgan talk contribs uploaded File:Fly.merged.fasta (Each half was aligned using the NAST aligner and then both halves were concatenated. There is a reference sequence in there (called testseq) that was used to decide where to end the left half and begin the right half before concatenating.)
• 15:02, 11 June 2009 Jenna L Morgan talk contribs uploaded File:Fly.contigs (These are the reads that assembled into complete clones using the JGI's 16S pipeline (genelib).)
• 15:00, 11 June 2009 Jenna L Morgan talk contribs uploaded a new version of File:Fly.frags (These are the quality-trimmed reads that did not have enough overlap to assemble (thus "frags").)
• 14:59, 11 June 2009 Jenna L Morgan talk contribs uploaded File:Fly.frags (These are the quality-trimmed reads that did not have enough overlap to assemble (thus "frags").)
• 14:53, 11 June 2009 Jenna L Morgan talk contribs uploaded File:Fly.frags.right (*These are the quality-trimmed reads that did not have enough overlap to assemble (thus "frags") and had a significant blast hit to the "right" side of a reference 16S sequence.)
• 14:51, 11 June 2009 Jenna L Morgan talk contribs uploaded File:Fly.frags.left (These are the quality-trimmed reads that did not have enough overlap to assemble (thus "frags") and had a significant blast hit to the "left" side of a reference 16S sequence.)
• 18:35, 20 April 2009 Jenna L Morgan talk contribs uploaded File:Classifications All NAST.Bchimera.fasta28223.xls (putative chimeric sequences)
• 18:34, 20 April 2009 Jenna L Morgan talk contribs uploaded File:Classifications All NAST.Bambig.fasta27959.xls (sub-threshhold chimeric sequences)
• 18:32, 20 April 2009 Jenna L Morgan talk contribs uploaded File:Classifications All NAST.Bclean.fasta30593.xls (taxonomy assignments for the 6321 clean sequences)
• 02:20, 20 April 2009 Jenna L Morgan talk contribs uploaded File:SurveySequencedTable-1.xls (SurveySequencedTable.xls, updated by Jenna April 19th)
• 01:44, 20 April 2009 Jenna L Morgan talk contribs uploaded a new version of File:All.good.gz (This is the NAST-generated fasta-formatted alignment of all sequences deemed to be clean by the chimera checker. Sub-threshhold (44) and putative (291) chimeras have been removed.)
• 01:34, 20 April 2009 Jenna L Morgan talk contribs uploaded File:All NAST Bel job17274.tgz (Chimera check results. This includes 4 documents: 1. An excel spreadsheet with statistics and notes summarizing chimera check results. 2. A fasta file with 44 ambiguous (sub-threshhold) chimeric sequences. 3. A fasta file with 291 putative chimeric sequen)
• 05:50, 15 April 2009 Jenna L Morgan talk contribs uploaded File:All.fasta.gz
• 05:43, 14 April 2009 Jenna L Morgan talk contribs uploaded File:All.good.gz (Drosophila-associated 16S sequences - warning! - this file will undergo a series of quality control checks and may prove to be full of erroneous sequences!!! use at your own risk!)
• 23:38, 26 January 2009 Jenna L Morgan talk contribs uploaded File:MetaSim long.pdf (This is an older, longer version of the presentation that gave. It should provide a better idea of the experimental design than the 5-minute version. I will supplement it with new results based on additional data within the next week.)
• 00:52, 14 January 2009 Jenna L Morgan talk contribs uploaded File:Chromatogram.jpg