User contributions for RCharalel

3 May 2007

• 06:4406:44, 3 May 2007 diff hist −2‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-5-3 ‎ →‎Documentation current
• 06:4406:44, 3 May 2007 diff hist +2,493‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-5-3 ‎No edit summary

2 May 2007

• 23:0723:07, 2 May 2007 diff hist +280‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-5-3 ‎ →‎Progress
• 22:5622:56, 2 May 2007 diff hist +583‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-5-3 ‎No edit summary
• 22:4222:42, 2 May 2007 diff hist +150‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-5-3 ‎ →‎Code
• 22:3922:39, 2 May 2007 diff hist +4,187‎ N Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-5-3 ‎ New page: ==Annotation== *The following code combines the work that both Cynthia and I have done to return mesh terms (all mesh terms as well as just the major mesh terms) that are derived from two ...

30 April 2007

• 21:4021:40, 30 April 2007 diff hist +148‎ Harvard:Biophysics 101/2007/04/26 ‎No edit summary
• 21:3821:38, 30 April 2007 diff hist −1‎ User:RCharalel ‎ →‎Biophysics 101 current
• 21:3721:37, 30 April 2007 diff hist +1‎ User:RCharalel ‎ →‎Biophysics 101
• 21:3621:36, 30 April 2007 diff hist −1‎ User:RCharalel ‎ →‎Biophysics 101
• 21:3521:35, 30 April 2007 diff hist +152‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-5-1 ‎ →‎Update current
• 21:3421:34, 30 April 2007 diff hist +4‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-5-1 ‎ →‎Update
• 21:3421:34, 30 April 2007 diff hist +5,822‎ N Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-5-1 ‎ New page: ==Update== *I have been out of town since last Thursday's class for a revisit weekend and did not have email/computer access there. So, unfortunately, I did not get as much to work on thi...
• 21:0521:05, 30 April 2007 diff hist +159‎ Harvard:Biophysics 101/2007/04/26 ‎No edit summary

25 April 2007

• 20:4520:45, 25 April 2007 diff hist +4,365‎ N Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-26 ‎ New page: ==Comments== *I think I now have all of the necessary pieces of code to create a program, which will parse the XML of any returned OMIM entry to retrieve the PMIDs, then search these throu... current
• 20:4120:41, 25 April 2007 diff hist +74‎ Harvard:Biophysics 101/2007/04/19 ‎No edit summary

23 April 2007

• 21:3621:36, 23 April 2007 diff hist +89‎ Harvard:Biophysics 101/2007/04/19 ‎No edit summary
• 21:3521:35, 23 April 2007 diff hist +3,893‎ N Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-24 ‎ New page: ==Tasks Accomplished== *Grasped a much better understanding of XML parsing. *Finished code to parse OMIM records and return all Pubmed ID numbers (without errors). *Wrote code to search Pu... current
• 21:2721:27, 23 April 2007 diff hist +90‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-19 ‎ →‎Tasks for Tuesday and Thursday current
• 21:2621:26, 23 April 2007 diff hist 0‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-19 ‎ →‎Program So Far
• 21:2521:25, 23 April 2007 diff hist +8‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-19 ‎ →‎Program So Far
• 21:2521:25, 23 April 2007 diff hist +310‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-19 ‎No edit summary
• 21:2221:22, 23 April 2007 diff hist 0‎ Harvard:Biophysics 101/2007/04/19 ‎No edit summary
• 21:2121:21, 23 April 2007 diff hist +171‎ Harvard:Biophysics 101/2007/04/19 ‎No edit summary

18 April 2007

• 19:1919:19, 18 April 2007 diff hist +294‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-19 ‎ →‎Issues
• 19:1619:16, 18 April 2007 diff hist +881‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-19 ‎ →‎Issues
• 19:0019:00, 18 April 2007 diff hist +150‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-13 ‎ →‎What I Plan to Contribute current
• 19:0019:00, 18 April 2007 diff hist +288‎ N Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-19 ‎ New page: ==Issues== *I think I have an appropriate algorithm for deriving keywords and printing some PMIDs. However, I keep getting this weird error message that says my spacing is incorrect and w...

16 April 2007

• 21:3421:34, 16 April 2007 diff hist +387‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-13 ‎ →‎Notes
• 21:1021:10, 16 April 2007 diff hist +265‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-13 ‎ →‎What I Plan to Contribute
• 21:0721:07, 16 April 2007 diff hist +9‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-17 ‎No edit summary current
• 21:0621:06, 16 April 2007 diff hist +2,195‎ N Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-17 ‎ New page: Applications: Our program can be used for a variety of applications. In particular, it is able to locate single nucleotide polymorphisms (SNPs) in an entered DNA sequence and return any...

13 April 2007

• 13:0213:02, 13 April 2007 diff hist +5‎ Harvard:Biophysics 101/2007/04/12 ‎No edit summary
• 13:0013:00, 13 April 2007 diff hist +12‎ Harvard:Biophysics 101/2007/04/12 ‎No edit summary
• 12:5912:59, 13 April 2007 diff hist +56‎ Harvard:Biophysics 101/2007/04/12 ‎No edit summary
• 12:5812:58, 13 April 2007 diff hist +579‎ N Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-13 ‎ New page: ==What I Plan to Contribute== *I am currently writing up how to use our program and separately, how it works. It is almost done and will be completed by Tuesday. *I will write code to ge...
• 12:4812:48, 13 April 2007 diff hist +8‎ Harvard:Biophysics 101/2007/04/10 ‎ →‎What we need

5 April 2007

• 08:3108:31, 5 April 2007 diff hist +112‎ Harvard:Biophysics 101/2007/Project ‎ →‎OMIM
• 08:3008:30, 5 April 2007 diff hist −1‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-5 ‎ →‎OMIM to Review Articles in Pubmed current
• 08:2908:29, 5 April 2007 diff hist +642‎ N Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-5 ‎ New page: ==OMIM to Review Articles in Pubmed== *The following is the code to return a list of review references for the disease returned through Xiaodi's code. <\pre> from Bio import PubMed fro...

18 March 2007

• 07:0207:02, 18 March 2007 diff hist +796‎ N Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-20 ‎ New page: ==Assignment== There are a number of steps to be taken in order to create a program that will achieve the requested functions and I think Xiaodi, Mike and Zach outline those beautifully. ... current
• 06:5406:54, 18 March 2007 diff hist +627‎ Harvard:Biophysics 101/2007/Notebook:Xiaodi Wu/2007-3-20 ‎No edit summary

14 March 2007

• 20:2320:23, 14 March 2007 diff hist −11‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-15 ‎ →‎Task 2
• 20:2120:21, 14 March 2007 diff hist +13‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-15 ‎ →‎Task 2
• 20:2020:20, 14 March 2007 diff hist +13‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-15 ‎ →‎Task 2
• 20:2020:20, 14 March 2007 diff hist +2,116‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-15 ‎ →‎Task 2
• 19:5019:50, 14 March 2007 diff hist +1,394‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-15 ‎ →‎Task 1

13 March 2007

• 13:4713:47, 13 March 2007 diff hist +9‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-15 ‎ →‎Task 1
• 13:4613:46, 13 March 2007 diff hist +265‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-15 ‎ →‎Task 1
• 12:5512:55, 13 March 2007 diff hist 0‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-15 ‎ →‎Task 1