User contributions for RCharalel

3 May 2007

• 05:4405:44, 3 May 2007 diff hist −2‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-5-3 ‎ →‎Documentation current
• 05:4405:44, 3 May 2007 diff hist +2,493‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-5-3 ‎No edit summary

2 May 2007

• 22:0722:07, 2 May 2007 diff hist +280‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-5-3 ‎ →‎Progress
• 21:5621:56, 2 May 2007 diff hist +583‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-5-3 ‎No edit summary
• 21:4221:42, 2 May 2007 diff hist +150‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-5-3 ‎ →‎Code
• 21:3921:39, 2 May 2007 diff hist +4,187‎ N Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-5-3 ‎ New page: ==Annotation== *The following code combines the work that both Cynthia and I have done to return mesh terms (all mesh terms as well as just the major mesh terms) that are derived from two ...

30 April 2007

• 20:4020:40, 30 April 2007 diff hist +148‎ Harvard:Biophysics 101/2007/04/26 ‎No edit summary
• 20:3820:38, 30 April 2007 diff hist −1‎ User:RCharalel ‎ →‎Biophysics 101 current
• 20:3720:37, 30 April 2007 diff hist +1‎ User:RCharalel ‎ →‎Biophysics 101
• 20:3620:36, 30 April 2007 diff hist −1‎ User:RCharalel ‎ →‎Biophysics 101
• 20:3520:35, 30 April 2007 diff hist +152‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-5-1 ‎ →‎Update current
• 20:3420:34, 30 April 2007 diff hist +4‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-5-1 ‎ →‎Update
• 20:3420:34, 30 April 2007 diff hist +5,822‎ N Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-5-1 ‎ New page: ==Update== *I have been out of town since last Thursday's class for a revisit weekend and did not have email/computer access there. So, unfortunately, I did not get as much to work on thi...
• 20:0520:05, 30 April 2007 diff hist +159‎ Harvard:Biophysics 101/2007/04/26 ‎No edit summary

25 April 2007

• 19:4519:45, 25 April 2007 diff hist +4,365‎ N Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-26 ‎ New page: ==Comments== *I think I now have all of the necessary pieces of code to create a program, which will parse the XML of any returned OMIM entry to retrieve the PMIDs, then search these throu... current
• 19:4119:41, 25 April 2007 diff hist +74‎ Harvard:Biophysics 101/2007/04/19 ‎No edit summary

23 April 2007

• 20:3620:36, 23 April 2007 diff hist +89‎ Harvard:Biophysics 101/2007/04/19 ‎No edit summary
• 20:3520:35, 23 April 2007 diff hist +3,893‎ N Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-24 ‎ New page: ==Tasks Accomplished== *Grasped a much better understanding of XML parsing. *Finished code to parse OMIM records and return all Pubmed ID numbers (without errors). *Wrote code to search Pu... current
• 20:2720:27, 23 April 2007 diff hist +90‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-19 ‎ →‎Tasks for Tuesday and Thursday current
• 20:2620:26, 23 April 2007 diff hist 0‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-19 ‎ →‎Program So Far
• 20:2520:25, 23 April 2007 diff hist +8‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-19 ‎ →‎Program So Far
• 20:2520:25, 23 April 2007 diff hist +310‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-19 ‎No edit summary
• 20:2220:22, 23 April 2007 diff hist 0‎ Harvard:Biophysics 101/2007/04/19 ‎No edit summary
• 20:2120:21, 23 April 2007 diff hist +171‎ Harvard:Biophysics 101/2007/04/19 ‎No edit summary

18 April 2007

• 18:1918:19, 18 April 2007 diff hist +294‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-19 ‎ →‎Issues
• 18:1618:16, 18 April 2007 diff hist +881‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-19 ‎ →‎Issues
• 18:0018:00, 18 April 2007 diff hist +150‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-13 ‎ →‎What I Plan to Contribute current
• 18:0018:00, 18 April 2007 diff hist +288‎ N Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-19 ‎ New page: ==Issues== *I think I have an appropriate algorithm for deriving keywords and printing some PMIDs. However, I keep getting this weird error message that says my spacing is incorrect and w...

16 April 2007

• 20:3420:34, 16 April 2007 diff hist +387‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-13 ‎ →‎Notes
• 20:1020:10, 16 April 2007 diff hist +265‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-13 ‎ →‎What I Plan to Contribute
• 20:0720:07, 16 April 2007 diff hist +9‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-17 ‎No edit summary current
• 20:0620:06, 16 April 2007 diff hist +2,195‎ N Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-17 ‎ New page: Applications: Our program can be used for a variety of applications. In particular, it is able to locate single nucleotide polymorphisms (SNPs) in an entered DNA sequence and return any...

13 April 2007

• 12:0212:02, 13 April 2007 diff hist +5‎ Harvard:Biophysics 101/2007/04/12 ‎No edit summary
• 12:0012:00, 13 April 2007 diff hist +12‎ Harvard:Biophysics 101/2007/04/12 ‎No edit summary
• 11:5911:59, 13 April 2007 diff hist +56‎ Harvard:Biophysics 101/2007/04/12 ‎No edit summary
• 11:5811:58, 13 April 2007 diff hist +579‎ N Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-13 ‎ New page: ==What I Plan to Contribute== *I am currently writing up how to use our program and separately, how it works. It is almost done and will be completed by Tuesday. *I will write code to ge...
• 11:4811:48, 13 April 2007 diff hist +8‎ Harvard:Biophysics 101/2007/04/10 ‎ →‎What we need

5 April 2007

• 07:3107:31, 5 April 2007 diff hist +112‎ Harvard:Biophysics 101/2007/Project ‎ →‎OMIM
• 07:3007:30, 5 April 2007 diff hist −1‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-5 ‎ →‎OMIM to Review Articles in Pubmed current
• 07:2907:29, 5 April 2007 diff hist +642‎ N Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-5 ‎ New page: ==OMIM to Review Articles in Pubmed== *The following is the code to return a list of review references for the disease returned through Xiaodi's code. <\pre> from Bio import PubMed fro...

18 March 2007

• 06:0206:02, 18 March 2007 diff hist +796‎ N Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-20 ‎ New page: ==Assignment== There are a number of steps to be taken in order to create a program that will achieve the requested functions and I think Xiaodi, Mike and Zach outline those beautifully. ... current
• 05:5405:54, 18 March 2007 diff hist +627‎ Harvard:Biophysics 101/2007/Notebook:Xiaodi Wu/2007-3-20 ‎No edit summary

14 March 2007

• 19:2319:23, 14 March 2007 diff hist −11‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-15 ‎ →‎Task 2
• 19:2119:21, 14 March 2007 diff hist +13‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-15 ‎ →‎Task 2
• 19:2019:20, 14 March 2007 diff hist +13‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-15 ‎ →‎Task 2
• 19:2019:20, 14 March 2007 diff hist +2,116‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-15 ‎ →‎Task 2
• 18:5018:50, 14 March 2007 diff hist +1,394‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-15 ‎ →‎Task 1

13 March 2007

• 12:4712:47, 13 March 2007 diff hist +9‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-15 ‎ →‎Task 1
• 12:4612:46, 13 March 2007 diff hist +265‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-15 ‎ →‎Task 1
• 11:5511:55, 13 March 2007 diff hist 0‎ Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-3-15 ‎ →‎Task 1