User contributions for Mdwang

3 May 2007

• 06:2606:26, 3 May 2007 diff hist +1,206‎ N Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-5-2 ‎ New page: Polyphen code: This has been a rather frustrating search for something I know already exists. The pseudocode is as follows: Input: Coding sequence, mutation position, original amino acid... current
• 06:2006:20, 3 May 2007 diff hist −1‎ User:Mdwang ‎No edit summary current

2 May 2007

• 18:4018:40, 2 May 2007 diff hist +8,102‎ N Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-5-1 ‎ New page: Here's the code for a function that compares a query and reference sequence, returning a list of mutation objects that specify its position in both sequences. Its based on the program wro... current

24 April 2007

• 04:3004:30, 24 April 2007 diff hist +462‎ Harvard:Biophysics 101/2007/04/19 ‎No edit summary

19 April 2007

• 06:0706:07, 19 April 2007 diff hist +1,171‎ Harvard:Biophysics 101/2007/Notebook:Mdwang/2007-4-13 ‎No edit summary current

16 April 2007

• 21:4721:47, 16 April 2007 diff hist +204‎ N Harvard:Biophysics 101/2007/Notebook:Mdwang/2007-4-13 ‎ New page: Deliverable by April 19: Based on a list of rs ID's from the dbSNP search, return a list of gene loci and the cumulative percentage of mutation in the population for all disease related SN...
• 21:3921:39, 16 April 2007 diff hist +167‎ Harvard:Biophysics 101/2007/04/12 ‎No edit summary

18 March 2007

• 10:2210:22, 18 March 2007 diff hist +4‎ Harvard:Biophysics 101/2007/Notebook:Xiaodi Wu/2007-3-20 ‎No edit summary
• 10:2210:22, 18 March 2007 diff hist +261‎ Harvard:Biophysics 101/2007/Notebook:Xiaodi Wu/2007-3-20 ‎No edit summary
• 10:0410:04, 18 March 2007 diff hist +326‎ Harvard:Biophysics 101/2007/Notebook:Xiaodi Wu/2007-3-20 ‎No edit summary
• 09:5909:59, 18 March 2007 diff hist +1,276‎ Harvard:Biophysics 101/2007/Notebook:Xiaodi Wu/2007-3-20 ‎No edit summary

17 March 2007

• 22:2722:27, 17 March 2007 diff hist +1,041‎ Harvard:Biophysics 101/2007/Notebook:Xiaodi Wu/2007-3-20 ‎No edit summary

14 March 2007

• 21:4621:46, 14 March 2007 diff hist +3,860‎ Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-3-15 ‎No edit summary current
• 20:5220:52, 14 March 2007 diff hist +11‎ Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-3-15 ‎No edit summary
• 20:5120:51, 14 March 2007 diff hist +32‎ Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-3-15 ‎No edit summary
• 20:5120:51, 14 March 2007 diff hist +927‎ N Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-3-15 ‎ New page: The first thing I did was identify the orfs in the sequence. I could use my orf function from the last assignment, but I did it manually and found a start codon at position 62 and a stop ...

7 March 2007

• 23:5923:59, 7 March 2007 diff hist −1‎ Harvard:Biophysics 101/2007/Project ‎ →‎Input Data
• 23:5923:59, 7 March 2007 diff hist +23‎ Harvard:Biophysics 101/2007/Project ‎ →‎Input Data
• 23:5823:58, 7 March 2007 diff hist +346‎ Harvard:Biophysics 101/2007/Project ‎ →‎Input Data
• 23:4923:49, 7 March 2007 diff hist +217‎ Harvard:Biophysics 101/2007/Project ‎ →‎Input Data

5 March 2007

• 23:3223:32, 5 March 2007 diff hist +1,653‎ Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-3-6 ‎No edit summary current
• 23:3123:31, 5 March 2007 diff hist −83‎ Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-3-6 ‎No edit summary
• 23:3123:31, 5 March 2007 diff hist +169‎ Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-3-6 ‎No edit summary
• 23:2323:23, 5 March 2007 diff hist +10,921‎ N Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-3-6 ‎ New page: Notes: This isn't as clean as the sample output, but it compares two hardcoded strings and does mutation compatison. The functions package mutations and orfs into objects that could be ex...

3 March 2007

• 01:0201:02, 3 March 2007 diff hist +9,531‎ N Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-3-2 ‎ New page: The basic functions now all work: I just need to format the output and tidy it up. The object containment wasn't as tight as I originally hoped. I think perhaps the most logical all-enco... current

1 March 2007

• 02:0702:07, 1 March 2007 diff hist +7,497‎ N Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-28 ‎ New page: I've tried to design this program in a somehwat formulaic oo design. Clearly, I'm a bit rusty as it's taking alot longer than I thought it would. The program is still not yet complete, b... current

28 February 2007

• 00:0600:06, 28 February 2007 diff hist +2,547‎ Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-27 ‎No edit summary current

27 February 2007

• 22:0922:09, 27 February 2007 diff hist +56‎ Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-27 ‎No edit summary
• 22:0422:04, 27 February 2007 diff hist +240‎ Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-27 ‎No edit summary
• 22:0422:04, 27 February 2007 diff hist +476‎ Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-27 ‎No edit summary
• 11:1911:19, 27 February 2007 diff hist +2,478‎ N Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-27 ‎ New page: Notes: I've decided to make an orf class that indexes to a list of codon classes. The mutation detection will be built into comparators for the class. It's taking me a bit to figure out e...

22 February 2007

• 03:5503:55, 22 February 2007 diff hist −36‎ Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-20 ‎No edit summary current
• 02:2302:23, 22 February 2007 diff hist +2‎ Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-20 ‎No edit summary
• 02:1902:19, 22 February 2007 diff hist −1‎ Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-20 ‎No edit summary
• 02:1802:18, 22 February 2007 diff hist +17‎ Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-20 ‎No edit summary
• 02:1402:14, 22 February 2007 diff hist −7‎ Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-20 ‎No edit summary
• 02:1302:13, 22 February 2007 diff hist −1‎ Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-20 ‎No edit summary
• 02:1202:12, 22 February 2007 diff hist +1,009‎ Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-20 ‎No edit summary

19 February 2007

• 21:2421:24, 19 February 2007 diff hist −1‎ Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-20 ‎No edit summary
• 21:2321:23, 19 February 2007 diff hist +49‎ Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-20 ‎No edit summary
• 21:2221:22, 19 February 2007 diff hist +112‎ User:Mdwang ‎No edit summary
• 21:2121:21, 19 February 2007 diff hist −12,467‎ Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-13 ‎ Removing all content from page current
• 21:2021:20, 19 February 2007 diff hist +12,467‎ N Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-20 ‎ New page: For anyone still trying to get clustalw working on a PC after reading the link [http://openwetware.org/wiki/Talk:Harvard:Biophysics_101/2007/02/13/install-clustalw#Windows here], the key s...
• 21:0921:09, 19 February 2007 diff hist 0‎ N File:Apoemod.fasta ‎No edit summary current
• 21:0921:09, 19 February 2007 diff hist +3‎ Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-13 ‎No edit summary
• 21:0821:08, 19 February 2007 diff hist 0‎ N File:Copy of apoe.fasta ‎No edit summary current
• 21:0721:07, 19 February 2007 diff hist +11,136‎ Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-13 ‎No edit summary
• 17:5017:50, 19 February 2007 diff hist +268‎ Talk:Harvard:Biophysics 101/2007/02/13/install-clustalw ‎No edit summary current
• 17:4117:41, 19 February 2007 diff hist 0‎ Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-13 ‎No edit summary
• 17:4117:41, 19 February 2007 diff hist +303‎ Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-13 ‎No edit summary