User contributions for Mdwang

3 May 2007

• 13:2613:26, 3 May 2007 diff hist +1,206 N Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-5-2 New page: Polyphen code: This has been a rather frustrating search for something I know already exists. The pseudocode is as follows: Input: Coding sequence, mutation position, original amino acid... current
• 13:2013:20, 3 May 2007 diff hist −1 User:Mdwang No edit summary current
• 01:4001:40, 3 May 2007 diff hist +8,102 N Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-5-1 New page: Here's the code for a function that compares a query and reference sequence, returning a list of mutation objects that specify its position in both sequences. Its based on the program wro... current

24 April 2007

• 11:3011:30, 24 April 2007 diff hist +462 Harvard:Biophysics 101/2007/04/19 No edit summary

19 April 2007

• 13:0713:07, 19 April 2007 diff hist +1,171 Harvard:Biophysics 101/2007/Notebook:Mdwang/2007-4-13 No edit summary current

17 April 2007

• 04:4704:47, 17 April 2007 diff hist +204 N Harvard:Biophysics 101/2007/Notebook:Mdwang/2007-4-13 New page: Deliverable by April 19: Based on a list of rs ID's from the dbSNP search, return a list of gene loci and the cumulative percentage of mutation in the population for all disease related SN...
• 04:3904:39, 17 April 2007 diff hist +167 Harvard:Biophysics 101/2007/04/12 No edit summary

18 March 2007

• 17:2217:22, 18 March 2007 diff hist +4 Harvard:Biophysics 101/2007/Notebook:Xiaodi Wu/2007-3-20 No edit summary
• 17:2217:22, 18 March 2007 diff hist +261 Harvard:Biophysics 101/2007/Notebook:Xiaodi Wu/2007-3-20 No edit summary
• 17:0417:04, 18 March 2007 diff hist +326 Harvard:Biophysics 101/2007/Notebook:Xiaodi Wu/2007-3-20 No edit summary
• 16:5916:59, 18 March 2007 diff hist +1,276 Harvard:Biophysics 101/2007/Notebook:Xiaodi Wu/2007-3-20 No edit summary
• 05:2705:27, 18 March 2007 diff hist +1,041 Harvard:Biophysics 101/2007/Notebook:Xiaodi Wu/2007-3-20 No edit summary

15 March 2007

• 04:4604:46, 15 March 2007 diff hist +3,860 Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-3-15 No edit summary current
• 03:5203:52, 15 March 2007 diff hist +11 Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-3-15 No edit summary
• 03:5103:51, 15 March 2007 diff hist +32 Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-3-15 No edit summary
• 03:5103:51, 15 March 2007 diff hist +927 N Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-3-15 New page: The first thing I did was identify the orfs in the sequence. I could use my orf function from the last assignment, but I did it manually and found a start codon at position 62 and a stop ...

8 March 2007

• 06:5906:59, 8 March 2007 diff hist −1 Harvard:Biophysics 101/2007/Project →Input Data
• 06:5906:59, 8 March 2007 diff hist +23 Harvard:Biophysics 101/2007/Project →Input Data
• 06:5806:58, 8 March 2007 diff hist +346 Harvard:Biophysics 101/2007/Project →Input Data
• 06:4906:49, 8 March 2007 diff hist +217 Harvard:Biophysics 101/2007/Project →Input Data

6 March 2007

• 06:3206:32, 6 March 2007 diff hist +1,653 Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-3-6 No edit summary current
• 06:3106:31, 6 March 2007 diff hist −83 Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-3-6 No edit summary
• 06:3106:31, 6 March 2007 diff hist +169 Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-3-6 No edit summary
• 06:2306:23, 6 March 2007 diff hist +10,921 N Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-3-6 New page: Notes: This isn't as clean as the sample output, but it compares two hardcoded strings and does mutation compatison. The functions package mutations and orfs into objects that could be ex...

3 March 2007

• 08:0208:02, 3 March 2007 diff hist +9,531 N Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-3-2 New page: The basic functions now all work: I just need to format the output and tidy it up. The object containment wasn't as tight as I originally hoped. I think perhaps the most logical all-enco... current

1 March 2007

• 09:0709:07, 1 March 2007 diff hist +7,497 N Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-28 New page: I've tried to design this program in a somehwat formulaic oo design. Clearly, I'm a bit rusty as it's taking alot longer than I thought it would. The program is still not yet complete, b... current

28 February 2007

• 07:0607:06, 28 February 2007 diff hist +2,547 Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-27 No edit summary current
• 05:0905:09, 28 February 2007 diff hist +56 Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-27 No edit summary
• 05:0405:04, 28 February 2007 diff hist +240 Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-27 No edit summary
• 05:0405:04, 28 February 2007 diff hist +476 Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-27 No edit summary

27 February 2007

• 18:1918:19, 27 February 2007 diff hist +2,478 N Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-27 New page: Notes: I've decided to make an orf class that indexes to a list of codon classes. The mutation detection will be built into comparators for the class. It's taking me a bit to figure out e...

22 February 2007

• 10:5510:55, 22 February 2007 diff hist −36 Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-20 No edit summary current
• 09:2309:23, 22 February 2007 diff hist +2 Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-20 No edit summary
• 09:1909:19, 22 February 2007 diff hist −1 Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-20 No edit summary
• 09:1809:18, 22 February 2007 diff hist +17 Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-20 No edit summary
• 09:1409:14, 22 February 2007 diff hist −7 Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-20 No edit summary
• 09:1309:13, 22 February 2007 diff hist −1 Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-20 No edit summary
• 09:1209:12, 22 February 2007 diff hist +1,009 Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-20 No edit summary

20 February 2007

• 04:2404:24, 20 February 2007 diff hist −1 Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-20 No edit summary
• 04:2304:23, 20 February 2007 diff hist +49 Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-20 No edit summary
• 04:2204:22, 20 February 2007 diff hist +112 User:Mdwang No edit summary
• 04:2104:21, 20 February 2007 diff hist −12,467 Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-13 Removing all content from page current
• 04:2004:20, 20 February 2007 diff hist +12,467 N Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-20 New page: For anyone still trying to get clustalw working on a PC after reading the link [http://openwetware.org/wiki/Talk:Harvard:Biophysics_101/2007/02/13/install-clustalw#Windows here], the key s...
• 04:0904:09, 20 February 2007 diff hist 0 N File:Apoemod.fasta No edit summary current
• 04:0904:09, 20 February 2007 diff hist +3 Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-13 No edit summary
• 04:0804:08, 20 February 2007 diff hist 0 N File:Copy of apoe.fasta No edit summary current
• 04:0704:07, 20 February 2007 diff hist +11,136 Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-13 No edit summary
• 00:5000:50, 20 February 2007 diff hist +268 Talk:Harvard:Biophysics 101/2007/02/13/install-clustalw No edit summary current
• 00:4100:41, 20 February 2007 diff hist 0 Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-13 No edit summary
• 00:4100:41, 20 February 2007 diff hist +303 Harvard:Biophysics 101/2007/Notebook:Michael Wang/2007-2-13 No edit summary