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Jump to navigationJump to search- 17:16, 21 February 2020 diff hist +19 Jmenzago Week 6 →Comparison of Sequences: filled in current
- 17:14, 21 February 2020 diff hist +244 Jmenzago Week 6 →Comparison of Sequences: added note about extra codon in aligned sequence of last visit
- 17:09, 21 February 2020 diff hist 0 Jmenzago Week 6 Undo revision 1077253 by Jmenzago (talk) Tag: Undo
- 17:09, 21 February 2020 diff hist +55 Jmenzago Week 6 Undo revision 1077255 by Jmenzago (talk) Tag: Undo
- 16:55, 21 February 2020 diff hist -55 Jmenzago Week 6 →Comparison of Sequences: took out three rows from table and emptied out S count cells to account for change in bin size
- 16:53, 21 February 2020 diff hist 0 Jmenzago Week 6 →Comparison of Sequences: changed bin size from 15 to 18 nucleotides
- 16:52, 21 February 2020 diff hist 0 Jmenzago Week 6 →Comparison of Sequences: changed name of table from "Table 1" to "Table 2"
- 16:47, 21 February 2020 diff hist +351 Jmenzago Week 6 →Comparison of Sequences: Added Table 2 and filled in all cells except for column "First Visit"
- 15:38, 21 February 2020 diff hist +173 Jmenzago Week 6 →Comparison of Sequences: added methods for calculating and comparing S values
- 15:59, 20 February 2020 diff hist +702 Jmenzago Week 6 →Generation of Phylogenetic Tree: added analysis of phylogenetic tree
- 15:44, 20 February 2020 diff hist +4 Jmenzago Week 6 →Methods/Results: edited syntax to make "Generation of Phylogenetic Trees" a subsection
- 15:43, 20 February 2020 diff hist +88 Jmenzago Week 6 →Methods/Results: added subsections for parts of this research project
- 15:40, 20 February 2020 diff hist +480 Jmenzago Week 6 →Methods/Results: added methods for generating phylogenetic tree
- 15:32, 20 February 2020 diff hist +98 Jmenzago Week 6 →Methods/Results: added new phylogenetic tree without strain from subject 4
- 15:31, 20 February 2020 diff hist +120 N File:Generated Phylogenetic Tree of First and Last Visits from Subjects Chosen for Study.PNG Generated Phylogenetic Tree of First and Last Visits from Subjects 1, 2, 3, 10, and 13 from Markham et al. current
- 15:27, 20 February 2020 diff hist -88 Jmenzago Week 6 →Methods/Results: removed tree, had a sequence from subject 4
- 15:19, 20 February 2020 diff hist +114 Jmenzago Week 6 →Methods/Results: added point describing the table for the phylogenetic tree
- 15:17, 20 February 2020 diff hist +88 Jmenzago Week 6 →Methods/Results: added image of phylogenetic tree
- 15:16, 20 February 2020 diff hist +220 N File:Phylogenetic Tree of First and Last Visits from Subjects Chosen for Study.PNG The generated phylogenetic tree of all HIV-1 clones for the first and last visits of subjects 1, 2, 3, 10, and 13 from Markham et al. to be used for the research project of Drew Cartmel and Jack Menzagopian current
- 14:59, 20 February 2020 diff hist +75 Jmenzago Week 6 →Methods/Results: added number of clones analyzed
- 14:57, 20 February 2020 diff hist +13,131 Jmenzago Week 6 →Methods/Results: added aligned sequence from first visit
- 14:55, 20 February 2020 diff hist +73 Jmenzago Week 6 →References: added APA citation for Bedrock page
- 14:53, 20 February 2020 diff hist +124 Jmenzago Week 6 →References: added reference to assignment page
- 14:52, 20 February 2020 diff hist -1 Jmenzago Week 6 →References: realigned bullet point for phylogeny.fr
- 14:51, 20 February 2020 diff hist +83 Jmenzago Week 6 →References: added reference to phylogeny.fr
- 14:50, 20 February 2020 diff hist +73 Jmenzago Week 6 →References: added link to bioquest page with all sequences
- 14:49, 20 February 2020 diff hist +17,014 Jmenzago Week 6 →Methods/Results: added aligned sequence for last visit
- 14:45, 20 February 2020 diff hist +99 Jmenzago Week 6 →Methods/Results: added bullet points identifying aligned sequences below
- 14:44, 20 February 2020 diff hist +17 Jmenzago Week 6 →Methods/Results: edited syntax for phylogeny.fr link to have the full link show up
- 14:43, 20 February 2020 diff hist +314 Jmenzago Week 6 →Methods/Results: added instructions for navigating phylogeny.fr
- 14:34, 20 February 2020 diff hist +114 Jmenzago Week 6 →Methods/Results: added step for aligning sequences
- 14:32, 20 February 2020 diff hist +38 Jmenzago Week 6 →Methods/Results: added column for dS/dN values in table
- 14:25, 20 February 2020 diff hist +383 Jmenzago Week 6 →Methods/Results: added methods for selection and filled in the table
- 14:17, 20 February 2020 diff hist +28 Jmenzago Week 6 →Methods/Results: added subjects selected for analysis and their progression
- 14:15, 20 February 2020 diff hist -28 Jmenzago Week 6 →Methods/Results: reduced number of rows to 5
- 13:39, 20 February 2020 diff hist +149 Jmenzago Week 6 →Methods/Results: added empty table with 9 rows (6 for rapid progressors, 3 for non progressors)
- 13:21, 20 February 2020 diff hist +220 Jmenzago Week 6 →Purpose: added hypothesis to purpose
- 12:54, 20 February 2020 diff hist +73 Jmenzago Week 6 →Acknowledgements: added acknowledgement for homework partner
- 12:53, 20 February 2020 diff hist +224 Jmenzago Week 6 →Purpose: Added purpose statement
- 23:25, 19 February 2020 diff hist +2 Jmenzago Week 5 →Part 1: Looking at clustering across subjects: added colons for points before clustal sequences and phylogenetic tree current
- 23:24, 19 February 2020 diff hist +4,933 Jmenzago Week 5 →Part 1: Looking at clustering across subjects: added clustal for sequences in table 1
- 23:21, 19 February 2020 diff hist +44 Jmenzago Week 5 →Part 1: Looking at clustering across subjects: added label for phylogenetic tree
- 23:20, 19 February 2020 diff hist +30 Jmenzago Week 5 →Part 1: Looking at clustering across subjects: added step to generate clustal
- 23:19, 19 February 2020 diff hist +206 Jmenzago Week 5 →Acknowledgements: added statement "Except for what is noted above..." and signature
- 23:18, 19 February 2020 diff hist +113 Jmenzago Week 5 →Acknowledgements: added acknowledgement for Dr. Dahlquist
- 23:16, 19 February 2020 diff hist 0 Jmenzago Week 5 →References: alphabetized references list
- 23:15, 19 February 2020 diff hist -480 Jmenzago Week 5 →References: removed all links to specific pages on phylogeny.fr and just cited the home page
- 23:13, 19 February 2020 diff hist +720 Jmenzago Week 5 →References: added citations for all NCBI pages and removed link to NCBI page for Markham et al. (just cited the paper itself)
- 23:02, 19 February 2020 diff hist +295 Jmenzago Week 5 →References: added reference for Markham et al.
- 23:00, 19 February 2020 diff hist +124 Jmenzago Week 5 →References: added reference to assignment page
