IGEM:Harvard/2006/DNA nanostructures/Literature

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Bibliography

Aptamers

  1. White RR, Sullenger BA, and Rusconi CP. Developing aptamers into therapeutics. J Clin Invest. 2000 Oct;106(8):929-34. DOI:10.1172/JCI11325 | PubMed ID:11032851 | HubMed [napt1]


Thrombin

  1. Velan T and Chandler WL. Effects of surgical trauma and cardiopulmonary bypass on active thrombin concentrations and the rate of thrombin inhibition in vivo. Pathophysiol Haemost Thromb. 2003 May-Jun;33(3):144-56. DOI:10.1159/000077823 | PubMed ID:15170395 | HubMed [thr1]
  2. Jackson CM and Nemerson Y. Blood coagulation. Annu Rev Biochem. 1980;49:765-811. DOI:10.1146/annurev.bi.49.070180.004001 | PubMed ID:6996572 | HubMed [thr2]
  3. Davie EW, Fujikawa K, and Kisiel W. The coagulation cascade: initiation, maintenance, and regulation. Biochemistry. 1991 Oct 29;30(43):10363-70. PubMed ID:1931959 | HubMed [thr3]
  4. White RR, Sullenger BA, and Rusconi CP. Developing aptamers into therapeutics. J Clin Invest. 2000 Oct;106(8):929-34. DOI:10.1172/JCI11325 | PubMed ID:11032851 | HubMed [thr4]
All Medline abstracts: PubMed | HubMed


Thrombin-specific aptamers

  1. Schultze P, Macaya RF, and Feigon J. Three-dimensional solution structure of the thrombin-binding DNA aptamer d(GGTTGGTGTGGTTGG). J Mol Biol. 1994 Feb 4;235(5):1532-47. DOI:10.1006/jmbi.1994.1105 | PubMed ID:8107090 | HubMed [tha1]
  2. Liu Y, Lin C, Li H, and Yan H. Aptamer-directed self-assembly of protein arrays on a DNA nanostructure. Angew Chem Int Ed Engl. 2005 Jul 11;44(28):4333-8. DOI:10.1002/anie.200501089 | PubMed ID:15945116 | HubMed [tha2]
  3. Li WX, Kaplan AV, Grant GW, Toole JJ, and Leung LL. A novel nucleotide-based thrombin inhibitor inhibits clot-bound thrombin and reduces arterial platelet thrombus formation. Blood. 1994 Feb 1;83(3):677-82. PubMed ID:8298130 | HubMed [tha3]
  4. Bock LC, Griffin LC, Latham JA, Vermaas EH, and Toole JJ. Selection of single-stranded DNA molecules that bind and inhibit human thrombin. Nature. 1992 Feb 6;355(6360):564-6. DOI:10.1038/355564a0 | PubMed ID:1741036 | HubMed [tha4]
  5. Macaya RF, Schultze P, Smith FW, Roe JA, and Feigon J. Thrombin-binding DNA aptamer forms a unimolecular quadruplex structure in solution. Proc Natl Acad Sci U S A. 1993 Apr 15;90(8):3745-9. PubMed ID:8475124 | HubMed [tha5]
All Medline abstracts: PubMed | HubMed


Antithrombotics

  1. Pengo V. New trends in anticoagulant treatments. Lupus. 2005;14(9):789-93. DOI:10.1191/0961203305lu2222oa | PubMed ID:16218489 | HubMed [anti1]


DNA bioavailability

  1. Patil SD, Rhodes DG, and Burgess DJ. DNA-based therapeutics and DNA delivery systems: a comprehensive review. AAPS J. 2005 Apr 8;7(1):E61-77. DOI:10.1208/aapsj070109 | PubMed ID:16146351 | HubMed [bioa1]
  2. Houk BE, Martin R, Hochhaus G, and Hughes JA. Pharmacokinetics of plasmid DNA in the rat. Pharm Res. 2001 Jan;18(1):67-74. PubMed ID:11336355 | HubMed [bioa2]
  3. Kawabata K, Takakura Y, and Hashida M. The fate of plasmid DNA after intravenous injection in mice: involvement of scavenger receptors in its hepatic uptake. Pharm Res. 1995 Jun;12(6):825-30. PubMed ID:7667185 | HubMed [bioa3]
All Medline abstracts: PubMed | HubMed


PEG covering

  1. Lee M and Kim SW. Polyethylene glycol-conjugated copolymers for plasmid DNA delivery. Pharm Res. 2005 Jan;22(1):1-10. PubMed ID:15771224 | HubMed [peg1]
  2. Putnam D, Zelikin AN, Izumrudov VA, and Langer R. Polyhistidine-PEG:DNA nanocomposites for gene delivery. Biomaterials. 2003 Nov;24(24):4425-33. PubMed ID:12922153 | HubMed [peg2]
All Medline abstracts: PubMed | HubMed


DNA nanostructures

  1. Rothemund PW. Folding DNA to create nanoscale shapes and patterns. Nature. 2006 Mar 16;440(7082):297-302. DOI:10.1038/nature04586 | PubMed ID:16541064 | HubMed [tet00]
  2. Shih WM, Quispe JD, and Joyce GF. A 1.7-kilobase single-stranded DNA that folds into a nanoscale octahedron. Nature. 2004 Feb 12;427(6975):618-21. DOI:10.1038/nature02307 | PubMed ID:14961116 | HubMed [tet0]
  3. Goodman RP, Schaap IA, Tardin CF, Erben CM, Berry RM, Schmidt CF, and Turberfield AJ. Rapid chiral assembly of rigid DNA building blocks for molecular nanofabrication. Science. 2005 Dec 9;310(5754):1661-5. DOI:10.1126/science.1120367 | PubMed ID:16339440 | HubMed [tet1]
  4. Chen JH and Seeman NC. Synthesis from DNA of a molecule with the connectivity of a cube. Nature. 1991 Apr 18;350(6319):631-3. DOI:10.1038/350631a0 | PubMed ID:2017259 | HubMed [tet2]
All Medline abstracts: PubMed | HubMed


Strand displacement

  1. Simmel FC and Yurke B. Using DNA to construct and power a nanoactuator. Phys Rev E Stat Nonlin Soft Matter Phys. 2001 Apr;63(4 Pt 1):041913. DOI:10.1103/PhysRevE.63.041913 | PubMed ID:11308883 | HubMed [sdc1]
  2. Yurke B, Turberfield AJ, Mills AP Jr, Simmel FC, and Neumann JL. A DNA-fuelled molecular machine made of DNA. Nature. 2000 Aug 10;406(6796):605-8. DOI:10.1038/35020524 | PubMed ID:10949296 | HubMed [sdc2]
All Medline abstracts: PubMed | HubMed


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