Biogang:Projects/Visualization of biological data
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This is supposed to be a book or a longer document describing current approaches of data visualization.
Proteins
Types of data
- sequence
- structure
- interactions and other networks
- dynamics
- folding
Visualization of sequence data
- sequence itself
- similarities: dotplot
- multidimensional sequence data: sequence logo, profile or HMM
- secondary structure mapped onto sequence
- spectrum, statistics, Fourier transform
- regular expressions
- binary schemas
- melody
Visualization of structural data
- water accessible surface, colors according to physical properties, sequence conservartion etc.
- structural elements: ss, sse, domains, cartoons
- activity
- electrostatics
- connections, internal coordinates, contact maps
- density maps