Biomolecular Breadboards:Protocols: Difference between revisions
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=== Design Cycle Time Analysis === | === Design Cycle Time Analysis === | ||
For a more | {| border = "1" cellpadding="5" style="width: 800px" | ||
! scope="col" | Simple circuit | |||
! scope="col" | Assembly time for ''in vitro'' testing | |||
! scope="col" | Assembly time for ''in vivo'' testing | |||
(1 plasmid construct) | |||
|- | |||
| style="width: 200px; | Negatively autoregulated gene || style="text-align:center" | 6.5 hours || style="text-align:center" | 3 days | |||
|- | |||
| Bistable switch || style="width: 200px; text-align:center" | 3 days || style="width: 200px; text-align:center" | 5 days minimum* | |||
|} | |||
( * Estimated. All other times are measured. ) | |||
For a more detailed description, please see [[Biomolecular Breadboards:Protocols:Cycle Time Measurements|Breadboard Cycle Time Measurements]]. | |||
Revision as of 08:16, 20 November 2012
| Home | Protocols | DNA parts | Preliminary Data | Models | More Info |
Cell-free circuit breadboard
The following protocols are available for the cell-free circuit breadboard:
- Reaction Preparation - Cell-free expression of circuits from linear or plasmid DNA
- TXTL template, v2.3 - TXTL spreadsheet for designing experiments
Cost estimate
The cell-free circuit breadboard costs approximately 2.64 cents per uL, or 31.7 cents per 12 uL reaction. The cost distribution is shown in the table below.
| Component | Material price per
μL of reaction |
Labor price per
μL of reaction |
Total price per
μL of reaction |
Total price per
12 μL reaction |
|---|---|---|---|---|
| E. coli crude extract | 0.45 cents | 0.62 cents | 1.07 cents | 12.84 cents |
| Amino acids | 0.21 cents | 0.03 cents | 0.24 cents | 2.93 cents |
| 3-PGA | 0.39 cents | 0.94 cents | 1.33 cents | 15.96 cents |
| Total price | 1.05 cents | 1.6 cents | 2.64 cents | 31.7 cents |
For a more detailed cost estimate, please see Breadboard Cost Estimate.
Design Cycle Time Analysis
| Simple circuit | Assembly time for in vitro testing | Assembly time for in vivo testing
(1 plasmid construct) |
|---|---|---|
| Negatively autoregulated gene | 6.5 hours | 3 days |
| Bistable switch | 3 days | 5 days minimum* |
( * Estimated. All other times are measured. )
For a more detailed description, please see Breadboard Cycle Time Measurements.
