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<b>20<font size="-1">th</font> Sep 2011</b>
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<h2>Measured concentrations of labeled oligonucleotides</h2>
<h2>Measured concentrations of labeled oligonucleotides</h2>
The concentration of the oligonucleotides were determined using nanodrop gadget. The measurement was done at 260 nm.
The concentration of the oligonucleotides were determined using nanodrop gadget. The measurement was done at 260 nm.

Revision as of 19:18, 29 October 2011

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20th Sep 2011

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Measured concentrations of labeled oligonucleotides

The concentration of the oligonucleotides were determined using nanodrop gadget. The measurement was done at 260 nm.

Results

The U structure labeled with Atto 550 ddCTP:

  • the_U_172, helix 4, c = 10.1 µM
  • the_U_175, helix 4, c = 5.7 µM
  • the_U_183, helix 5, c = 2.8 µM
  • the_U_197, helix 8, c = 11.1 µM

The U structure labeled with Atto 647N ddUTP:

  • the_U_173, helix 4, c = 9.9 µM
  • the_U_204, helix 20, c = 8.2 µM
  • the_U_218, helix 23, c = 7.1 µM
  • the_U_225, helix 29, c = 6.0 µM

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