Wilke:Tutorials

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Notice: The Wilke Lab page has moved to http://wilkelab.org.
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THE WILKE LAB

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Contents

  • 1 Tutorials
    • 1.1 General
    • 1.2 Genomics and Sequence Analysis
    • 1.3 Structural Biology

Tutorials

General

  • Editing pages on openwetware.org
  • Using the lab cluster
  • Creating publication-quality figures
  • Information theory
  • R tutorial videos
  • Common errors in statistical analyses

Genomics and Sequence Analysis

  • Notes on how to use HyPhy
  • Molecular Evolution: Alignment, Phylogeny, and Evolutionary Rate Analysis
  • Parsing with Biopython
  • Downloaded gene alignments from ensembl via Pycogent
  • Tutorial on how to do independent contrasts by Dolph Schluter

Structural Biology

  • Building an environment and equilibrating a PDB structure.
  • Mutant screening via Steered Molecular Dynamics (SMD).
  • ProDy (python) for analysis of large MD trajectories.
  • Bio3d (R) for analysis of large MD trajectories.
  • DSSP parser script.
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  • This page was last edited on 10 July 2013, at 10:46.
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