Wilke:Bio3d
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Notice: The Wilke Lab page has moved to http://wilkelab.org.
The page you are looking at is kept for archival purposes and will not be further updated.
The page you are looking at is kept for archival purposes and will not be further updated.
THE WILKE LAB
Bio3d Analysis
Bio3d is an R package for doing all kinds of structural manipulations and computations.
It seems to not allow one to parse trajectories frame-by-frame making analysis of large trajectories very difficult. Fortunately, the R code to parse dcd files is simple enough that I developed a function to iterate over the frame, rather than loading the trajectory into memory.
