From OpenWetWare
Jump to navigationJump to search
Notice: The Wilke Lab page has moved to http://wilkelab.org.
The page you are looking at is kept for archival purposes and will not be further updated.

Home        Contact        People        Research        Publications        Materials

Bio3d Analysis

Bio3d is an R package for doing all kinds of structural manipulations and computations.

It seems to not allow one to parse trajectories frame-by-frame making analysis of large trajectories very difficult. Fortunately, the R code to parse dcd files is simple enough that I developed a function to iterate over the frame, rather than loading the trajectory into memory.