User:Victor Chubukov

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Contact Info

Victor Chubukov (an artistic interpretation)

I work in the ‎Mukhopadhyay Lab at the Joint BioEnergy Institute.


  • 2010, PhD, University of California - San Francisco (Joint Graduate Group in Bioengineering with UC-Berkeley)
  • 2003, BS, University of Chicago (Mathematics/Computer Science)

Research interests

Systems biology and host engineering for synthetic biology and metabolic engineering. Please read more about my research interests here.


  1. Chubukov V, Gerosa L, Kochanowski K, and Sauer U. Coordination of microbial metabolism. Nat Rev Microbiol. 2014 May;12(5):327-40. DOI:10.1038/nrmicro3238 | PubMed ID:24658329 | HubMed [Coordination-of-microbial-metabolism]
  2. Chubukov V and Sauer U. Environmental dependence of stationary-phase metabolism in Bacillus subtilis and Escherichia coli. Appl Environ Microbiol. 2014 May;80(9):2901-9. DOI:10.1128/AEM.00061-14 | PubMed ID:24584250 | HubMed [Stationary-phase-metabolism]
  3. Chubukov V, Uhr M, Le Chat L, Kleijn RJ, Jules M, Link H, Aymerich S, Stelling J, and Sauer U. Transcriptional regulation is insufficient to explain substrate-induced flux changes in Bacillus subtilis. Mol Syst Biol. 2013 Nov 26;9:709. DOI:10.1038/msb.2013.66 | PubMed ID:24281055 | HubMed [Flux-transcript-analysis]
  4. Kochanowski K, Sauer U, and Chubukov V. Somewhat in control--the role of transcription in regulating microbial metabolic fluxes. Curr Opin Biotechnol. 2013 Dec;24(6):987-93. DOI:10.1016/j.copbio.2013.03.014 | PubMed ID:23571096 | HubMed [Transcriptional-regulation-metabolism]
  5. Chubukov V, Zuleta IA, and Li H. Regulatory architecture determines optimal regulation of gene expression in metabolic pathways. Proc Natl Acad Sci U S A. 2012 Mar 27;109(13):5127-32. DOI:10.1073/pnas.1114235109 | PubMed ID:22416120 | HubMed [Regulatory-architecture-amino-acids]
  6. Chin CS, Chubukov V, Jolly ER, DeRisi J, and Li H. Dynamics and design principles of a basic regulatory architecture controlling metabolic pathways. PLoS Biol. 2008 Jun 17;6(6):e146. DOI:10.1371/journal.pbio.0060146 | PubMed ID:18563967 | HubMed [Leucine-biosynthesis-dynamics]
  7. Fawzi NL, Chubukov V, Clark LA, Brown S, and Head-Gordon T. Influence of denatured and intermediate states of folding on protein aggregation. Protein Sci. 2005 Apr;14(4):993-1003. DOI:10.1110/ps.041177505 | PubMed ID:15772307 | HubMed [Protein-folding-and-aggregation]
  8. Fialkowski M, Bishop KJ, Chubukov VA, Campbell CJ, and Grzybowski BA. Architecture and evolution of organic chemistry. Angew Chem Int Ed Engl. 2005 Nov 11;44(44):7263-9. DOI:10.1002/anie.200502272 | PubMed ID:16276556 | HubMed [Evolution-of-organic-chemistry]
All Medline abstracts: PubMed | HubMed

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