User:Jarle Pahr/People

People doing interesting stuff:

http://www.pietervanboheemen.nl/

Torsten Seeman

Michael Hoffman

S Schuster

Stephan Pabinger: http://pabinger.site44.com/

• MemoSys
• Genome-scale model management and comparison. (Methods Mol Biol. 2013;985:3-16)
• SeqBench
• GageB

Istvan Albert: http://www.personal.psu.edu/users/i/u/iua1/

• BioStar founder

Cristopher Hogue: http://www.blueprint.org/

Daniel Zerbino:

• Velvet

Markus Covert:

• http://bioengineering.stanford.edu/faculty/covert.html

JL Reed:

• http://reedlab.che.wisc.edu/Publications/publications.html

Casey Bergman

Sara Kalvala: http://www2.warwick.ac.uk/fac/sci/dcs/people/sara_kalvala/

Ryan Bethencourt

• Counterculture Labs

Eri Gentry

• BioCurious founder

Ian Dworkin

Jacob Schiach

• BrightWorks Coresearch
• synbioaxlr8r
• Citizen Science Quarterly

Heng Li

• Author of SAMTools
• Biostars: http://www.biostars.org/u/795/

http://lh3lh3.users.sourceforge.net/

Keith Bradnam

• Sequencing

Richard Gourse

• ppGpp
• https://www.researchgate.net/profile/Richard_Gourse/
• http://www.bact.wisc.edu/faculty.php?init=RLG

Sean Eddy:

• HMMER

Peter Kock

• Biopython

Jonathan Cline: http://openwetware.org/wiki/User:Jonathan_Cline/Notebook

• Sensomatic

Brad Chapman

• CloudBioLinux
• GEMINI

Ethan White

• Scientific computing

Jonathan Eisen

C Titus Brown

• Genomics
• Khmer

Gregory Wilson:

• Software carpentry

Uwe Sauer:

• 13C-MFA

Sriam Kosuri: http://openwetware.org/wiki/Sriram_Kosuri

Ron Weiss

• Synthetic biology

Ron Milo: http://scholar.google.no/citations?view_op=view_citation&hl=no&user=L-_d3akAAAAJ&sortby=pubdate&citft=1&email_for_op=Jarle.pahr%40gmail.com&citation_for_view=L-_d3akAAAAJ:YFjsv_pBGBYC

• Network motifs

Nathan D Price: http://scholar.google.no/citations?sortby=pubdate&hl=no&user=8Ly8BO4AAAAJ&view_op=list_works

Jason Papin:

• http://bme.virginia.edu/people/papin.html
• http://www.ncbi.nlm.nih.gov/pubmed/23642247
• http://www.ncbi.nlm.nih.gov/pubmed/23417799

Costas D Maranas:

• http://maranas.che.psu.edu/
• OptKnock,OptCom,OptForce

David Fell:

• http://bms.brookes.ac.uk/staff/david_fell
• Building and analysing genome-scale metabolic models: http://www.ncbi.nlm.nih.gov/pubmed/20863283

Adam Paul Arkin

• SBML

David Gilbert:

• Petri nets

Sven Panke

• http://www.bsse.ethz.ch/bpl/
• http://www.bsse.ethz.ch/bpl/research
• Synthetic biology
• Microcolony screening: http://www.bsse.ethz.ch/bpl/studiarbeiten/Copas.pdf

Pamela Silver: http://silver.med.harvard.edu/

Howard Salis

• RBS calculator

Douglas Densmore

• SBOL
• DNA assembly
• Eugene

Tom Ellis

John Cumbers

• Astrobiology

Aaron Adler

• TASBE: http://web.mit.edu/jakebeal/www/Publications/IWBDA2011-toolchain.pdf
• BBN Technologies

Jerome Bonnet

• Amplifying genetic gates.

Joao Xavier

• Biofilms

Ines Thiele

• http://thielelab.eu/

DR Hyduke

• OpenCOBRA

Bernahrd Palsson:

• Leader, Systems Biology Research Group (SBRG) University of California San Diego (UCSD)
• http://systemsbiology.ucsd.edu/Researchers/Palsson

JD Orth:

• What is FBA?

AM Feist

• SBRG, UCSD
• http://systemsbiology.ucsd.edu/Researchers/Feist
• http://covertlab.stanford.edu/projects/ScienceGenealogy/viewScientist.php?ScientistID=5135

Mathias Heinemann:

• Schuetz, R., Zamboni, N., Zampieri, M., Heinemann, M., & Sauer, U. (2012). Multidimensional optimality of microbial metabolism. Science (New York, N.Y.), 336(6081), 601-604.

Joshua A Lerman

• CobraPy
• Student in Palsson lab
• ME-models

Radhakrishnan Mahadevan

Jean Peccoud

• GenoCAD

Nathan E Lewis: http://scholar.google.no/citations?user=kTAQ1WQAAAAJ&hl=no

• COBRA Toolbox

Thomas Landrain

• http://www.linkedin.com/pub/thomas-landrain/2a/a48/366

Science genealogy

http://covertlab.stanford.edu/projects/ScienceGenealogy/viewScientist.php?ScientistID=5135

Norway

Jan Christian Bryne:

• http://www.ous-research.no/home/myklebost/associated%20members/11633
• Northern Genomics
• Jan.Christian.Bryne<at>rr-research.no

Ragnhild Lothe:

• Oslo Cancer Cluster

http://www.ous-research.no/lothe/

People involved with NSC HTS course:

Lex Nederbragt (Norwegian Sequencing Centre, Dept. of Biosciences/Dept. of Informatics) Karin Lagesen (Norwegian Sequencing Centre, Oslo Univ. Hospital/Dept. of Informatics) Daniel Vodák (Bioinformatics core facility, Dept. of Tumor Biology, Norwegian Radium Hospital, Oslo University Hospital) Geir Kjetil Sandve (Dept. of Informatics) Jan Christian Bryne (Northern Genomics AS) Leonardo A. Meza-Zepeda (Genomics Core Facility, Dept. of Tumor Biology, Norwegian Radium Hospital, Oslo University Hospital) Merete Molton Worren (Bioinformatics core facility, Dept. of Tumor Biology, Norwegian Radium Hospital, Oslo University Hospital) Susanne Lorenz (Genomics Core Facility, Dept. of Tumor Biology, Norwegian Radium Hospital, Oslo University Hospital) Sveinung Gundersen (Dept. of Tumor Biology, Norwegian Radium Hospital, Oslo University Hospital) Timothy Hughes (Norwegian Sequencing Centre, Oslo Univ. Hospital)