User:Darek Kedra

Darek Kedra

Darek Kedra (away from a computer)

Hi, my name is Darek Kedra, I am a bioinformatician located in Catalonia, Spain.

You can email me through OpenWetWare.

Maintained pages

Recent courses

Introduction to NGS file formats and IGV

High-throughput next generation sequencing applied to infectious diseases

Tunis, Tunisia, September 2014

• Wikiomics:EMBO_Tunis_1 NGS, tips for genome sequencing, file formats
• Wikiomics:EMBO_Tunis_2 IGV, DNA mapping, GATK SNP calling

Introduction to bioinformatics for Next Generation Sequencing

Gene2Farm WinterSchool]

Piacenza, Italy November 2013

• Wikiomics:WinterSchool_day1 Linux, FASTQ, GFF
• Wikiomics:WinterSchool_day2 DNA mapping, BAM processing, RNASeq

Varia

Pages below are not up to date, but I plan to maintain them given a time.

• Wikiomics:RNA-Seq
• Wikiomics:Genome_aligners

• Wikiomics:Ensembl_local_install
• Wikiomics:Ensembl_local_install_draft
• Wikiomics:Ensembl_tutorials

• Wikiomics:Bioinfo_tutorial
• Wikiomics:BLAST_tutorial
• Wikiomics:Repeat_finding
• Wikiomics:Sequence motifs

• Wikiomics:Pathway_analysis
• Wikiomics:Protein mass spectrometry
• Wikiomics:Bioinformatics courses(external)
• Wikiomics:SRS_tutorials
• Wikiomics:ChIP-chip

• Wikiomics:Staden
• Wikiomics:DNA_sequencing
• Wikiomics:Cloning_in_silico
• Wikiomics:Genome_annotation
• Wikiomics:Mutation/SNP_detection

• Wikiomics:NMR_Toolbox
• Wikiomics:Crystallography_toolbox
• Wikiomics:Docking_toolbox
• Wikiomics:PSI-BLAST