Wikiomics:Mutation/SNP detection

Mutation/SNP detection

• PolyScan ref New program claimed to be superior to MutationSurveyor/PolyPhred/SNPdetector

• MutationSurveyor $$$ program. 30 days demo available. MS3 has a limit of MS3 400 traces in a single project. GUI. Used in several diagnostic labs.

• POLYBAYES Perl program. ref

• InSNP windows only, ABI base calls? detects substitution and indel SNPs in sequencing traces

• PolyPhred [ref http://nar.oxfordjournals.org/cgi/content/full/25/14/2745] 1997 program, integrated with phred and Consed.

see (unchecked yet): PolyPhred tutorial

SNP

• novoSNP ref Windows/Linux 2.0.3. GUI & command line on Linux.

• SNPdetector (ftp) ref

• SNP-PHAGE
• MAVIANT tool for SNP evaluation and annotation.