Synthetic Biology:Documents
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<wikionly> Go to http://syntheticbiology.org/ </wikionly>
Synthetic Biology is
A) the design and construction of new biological parts, devices, and systems, and
B) the re-design of existing, natural biological systems for useful purposes.
<wikionly>Please add other publications in the area of Synthetic Biology here.</wikionly>
Papers
- Synthetic Biology: Navigating the Challenges Ahead by Arjun Bhutkar in The Journal of Biolaw & Business vol.8, no.2, 2005.
- Special issue on synthetic biology in Nature
- Engineering Escherichia coli to see light by A. Levskaya, A.A. Chevalier, J.J. Tabor, Z.B. Simpson, L.A. Lavery, M.Levy, E.A. Davidson, A.Scouras, A.D. Ellington, E.M. Marcotte, and C.A. Voigt
- Refactoring bacteriophage T7 by Leon Chan, Sriram Kosuri and Drew Endy
- Engineering novel life commentary by Tom Knight
- Engineering life through Synthetic Biology by Paras Chopra and Akhil Kamma. In Silico Biol. 6, 0038 (2006).
- Public will fear biological accidents, not just attacks by Markus Schmidt in Nature, 2006, vol. 441, no. 7097 (Correspondence)
Theses
- BioJADE: A Design and Simulation Tool for Synthetic Biological Systems by Jonathan Goler
- Fluorescence assay for polymerase arrival rates by Austin Che
Technical reports
- Idempotent Vector Design for Standard Assembly of BioBricks by Tom Knight
- DARPA BioComp Plasmid Distribution 1.00 of Standard Biobrick Components by Tom Knight
- BioBricks++: Simplifying Assembly of Standard DNA Components by Austin Che
- A New Biobrick Assembly Strategy Designed for Facile Protein Engineering by Ira Phillips and Pam Silver
Reports
- Synthetic Biology: Applying Engineering to Biology Report of a NEST High-Level Expert Group. Published by the European Commission 2005
White papers
- From Understanding to Action: Community-Based Options for Improving Safety and Security in Synthetic Biology by Stephen M. Maurer, Keith V. Lucas & Starr Terrell, Goldman School of Public Policy, University of California at Berkeley
Presentations
- Pamela Silver's lecture & Lisa Geller's discussion on Synthetic Biology (mp3 file)
- Laurie Zoloth's recent lecture on ethics & Synthetic Biology.
- Paul Rabinow's recent lecture on security & Synthetic Biology.
- The Next Step in Bioevolution: Engineering the Microbial World by Austin Che
- A set of presentation slides and video from various talks by Drew Endy, many of which focus on the engineering of biology.
Thesis proposals
- Engineering the Interface Between Cellular Chassis and Integrated Biological Systems by Barry Canton
- Design and Evolution of Engineered Biological Systems by Jason Kelly
Posters
- Design and Evolution of Engineered Biological Systems by Jason Kelly, Josh Michener and Drew Endy
- Engineered Post-Translational Logic (PTL) by Samantha Sutton, Sara Neves, Lauren Leung and Drew Endy
- Engineering the Interface Between Cellular Chassis and Integrated Biological Systems by Barry Canton and Drew Endy
- Engineering transcription-based digital logic devices by Reshma Shetty and Tom Knight
- BioBricks++: Mindless Module Manipulation by Monkeys by Austin Che
Working drafts
- Draft 1: Regulatory Schemes in Biological Networks to Produce Desired Response and Stability. The genetic inverter: A computational case study
- Draft 2: Recombineering: Homologous Recombination-Mediated DNA Engineering in E. coli
- Draft 3: Electrical Models for Genetic Regulatory Elements
- Draft 4: Plasmid Engineering (pdf) (doc)
Comics
Other compilations
- Recent Synthetic Biology papers: PubMed, Cite-U-Like
- Project fact sheets of 4 European synthetic biology projects
- MIT DSpace Synthetic Biology Archive
- Ron Weiss' work on Programming Cells
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