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Publications: 2004

Search by year/type:

All 2006/07
2005 2004 2003 2002 2001 2000 1999 1998
1997 1996 1995 1994 1993 1992 1991 1990
Pre'90 Books

Publications in Non-PubMed databases

(A good place to check for other publications is the Web of Science)

  1. Hal Alper, and Gregory Stephanopoulos, (2004): Metabolic engineering challenges in the post-genomic era. Chemical Engineering Science, Vol. 59(22-23), Nov-Dec 2004; pp. 5009-5017.

Publications accessible in PubMed

  1. Styczynski MP, Jensen KL, Rigoutsos I, and Stephanopoulos GN. An extension and novel solution to the (l,d)-motif challenge problem. Genome Inform. 2004;15(2):63-71. PubMed ID:15706492 | HubMed [91]
  2. Heijnen JJ, van Gulik WM, Shimizu H, and Stephanopoulos G. Metabolic flux control analysis of branch points: an improved approach to obtain flux control coefficients from large perturbation data. Metab Eng. 2004 Oct;6(4):391-400. DOI:10.1016/j.ymben.2004.07.002 | PubMed ID:15491867 | HubMed [90]
  3. Stephanopoulos G, Alper H, and Moxley J. Exploiting biological complexity for strain improvement through systems biology. Nat Biotechnol. 2004 Oct;22(10):1261-7. DOI:10.1038/nbt1016 | PubMed ID:15470466 | HubMed [89]
  4. Raab RM and Stephanopoulos G. Dynamics of gene silencing by RNA interference. Biotechnol Bioeng. 2004 Oct 5;88(1):121-32. DOI:10.1002/bit.20216 | PubMed ID:15389485 | HubMed [88]
  5. Bullen JW Jr, Ziotopoulou M, Ungsunan L, Misra J, Alevizos I, Kokkotou E, Maratos-Flier E, Stephanopoulos G, and Mantzoros CS. Short-term resistance to diet-induced obesity in A/J mice is not associated with regulation of hypothalamic neuropeptides. Am J Physiol Endocrinol Metab. 2004 Oct;287(4):E662-70. DOI:10.1152/ajpendo.00114.2004 | PubMed ID:15361355 | HubMed [87]
  6. Schmitt WA Jr, Raab RM, and Stephanopoulos G. Elucidation of gene interaction networks through time-lagged correlation analysis of transcriptional data. Genome Res. 2004 Aug;14(8):1654-63. DOI:10.1101/gr.2439804 | PubMed ID:15289483 | HubMed [86]
  7. Lynch MD, Gill RT, and Stephanopoulos G. Mapping phenotypic landscapes using DNA micro-arrays. Metab Eng. 2004 Jul;6(3):177-85. DOI:10.1016/j.ymben.2004.01.002 | PubMed ID:15256207 | HubMed [85]
  8. Yoo H, Stephanopoulos G, and Kelleher JK. Quantifying carbon sources for de novo lipogenesis in wild-type and IRS-1 knockout brown adipocytes. J Lipid Res. 2004 Jul;45(7):1324-32. DOI:10.1194/jlr.M400031-JLR200 | PubMed ID:15102881 | HubMed [84]
  9. Iglesias AH, Camelo S, Hwang D, Villanueva R, Stephanopoulos G, and Dangond F. Microarray detection of E2F pathway activation and other targets in multiple sclerosis peripheral blood mononuclear cells. J Neuroimmunol. 2004 May;150(1-2):163-77. DOI:10.1016/j.jneuroim.2004.01.017 | PubMed ID:15081262 | HubMed [83]
  10. Jung GY and Stephanopoulos G. A functional protein chip for pathway optimization and in vitro metabolic engineering. Science. 2004 Apr 16;304(5669):428-31. DOI:10.1126/science.1096920 | PubMed ID:15087547 | HubMed [82]
  11. Lee K, Hwang D, Yokoyama T, Stephanopoulos G, Stephanopoulos GN, and Yarmush ML. Identification of optimal classification functions for biological sample and state discrimination from metabolic profiling data. Bioinformatics. 2004 Apr 12;20(6):959-69. DOI:10.1093/bioinformatics/bth015 | PubMed ID:14751977 | HubMed [81]
  12. Hwang D, Stephanopoulos G, and Chan C. Inverse modeling using multi-block PLS to determine the environmental conditions that provide optimal cellular function. Bioinformatics. 2004 Mar 1;20(4):487-99. DOI:10.1093/bioinformatics/btg433 | PubMed ID:14990444 | HubMed [80]
  13. Dangond F, Hwang D, Camelo S, Pasinelli P, Frosch MP, Stephanopoulos G, Stephanopoulos G, Brown RH Jr, and Gullans SR. Molecular signature of late-stage human ALS revealed by expression profiling of postmortem spinal cord gray matter. Physiol Genomics. 2004 Jan 15;16(2):229-39. DOI:10.1152/physiolgenomics.00087.2001 | PubMed ID:14645737 | HubMed [79]
  14. Wong MS, Raab RM, Rigoutsos I, Stephanopoulos GN, and Kelleher JK. Metabolic and transcriptional patterns accompanying glutamine depletion and repletion in mouse hepatoma cells: a model for physiological regulatory networks. Physiol Genomics. 2004 Jan 15;16(2):247-55. DOI:10.1152/physiolgenomics.00088.2003 | PubMed ID:14612591 | HubMed [78]
  15. Padilla L, Krämer R, Stephanopoulos G, and Agosin E. Overproduction of trehalose: heterologous expression of Escherichia coli trehalose-6-phosphate synthase and trehalose-6-phosphate phosphatase in Corynebacterium glutamicum. Appl Environ Microbiol. 2004 Jan;70(1):370-6. PubMed ID:14711665 | HubMed [77]
All Medline abstracts: PubMed | HubMed

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