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Synthetic Biology:Tools: Difference between revisions
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===DNA Tools=== | ===DNA Tools=== | ||
*[http://alpha.dmi.unict.it/~ctnyu/bbocus.html BBOCUS] by Ferro and Purrello lab | *[http://alpha.dmi.unict.it/~ctnyu/bbocus.html BBOCUS] by Ferro and Purrello lab | ||
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*[http://synbio.mit.edu/tools/clipboard.cgi Clipboard] by [[Austin Che]] | *[http://synbio.mit.edu/tools/clipboard.cgi Clipboard] by [[Austin Che]] | ||
**Web tool for getting complement, reverse complement, translation and restriction enzyme analysis of a DNA sequence | **Web tool for getting complement, reverse complement, translation and restriction enzyme analysis of a DNA sequence | ||
*[https://moleculamaxima.com Cytostudio] by Molecula Maxima | |||
**An integrated development environment and a compiler for a high-level bio-programming language for Synthetic Biology. | |||
**Based on iGEM conventions. Check out the [https://www.youtube.com/watch?v=05xe0vvnvpA intro video]. | |||
**Comprehensive debugger and restriction sites map viewer. | |||
**Autocomplete for the whole iGEM registry. | |||
**iGEM parts and devices, BioBrick ids, PDB ids, GenBank accession numbers, FASTA format files and codon usage optimizations are part of the language. | |||
**Visualize plasmid variables (circular view) and strand variables (linear view) as composites of iGEM parts and devices. | |||
**Proteins Viewer. | |||
**Use embedded web views to easily search in common databases. | |||
**Share open source projects as GitHub repositories in a single click. | |||
**Write plugins with JavaScript or Visual Basic to fit Cytostudio to your needs. | |||
*[http://helixweb.nih.gov/dnaworks/ DNAWorks] by Hoover and Lubkowski | *[http://helixweb.nih.gov/dnaworks/ DNAWorks] by Hoover and Lubkowski | ||
