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Biomod/2014/ASU/Results: Difference between revisions
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<p class = "serif" style = "color: #000000; font-size: 25px;"><span class = "mw-headline">Computational Simulations</span></p> | <p class = "serif" style = "color: #000000; font-size: 25px;"><span class = "mw-headline">Computational Simulations</span></p> | ||
<hr> | <hr> | ||
<p style = "color: #000000; font-size: 16px;">A pdb file of the control DNA tile was generated using CaDNAno and Cando used for visualization. From there, Avogadro was used to generate aptamer sequence, and the aptamers were manually inserted into the tile at the insertion points using PyMol. The structure was formatted.</p> | <p style = "color: #000000; font-size: 16px;">A pdb file of the control DNA tile was generated using CaDNAno and Cando used for visualization. From there, Avogadro was used to generate aptamer sequence, and the aptamers were manually inserted into the tile at the insertion points using PyMol. The structure was formatted to be used for molecular dynamic simulations in Gromacs.</p> <br> | ||
<img src = "http://openwetware.org/images/b/bd/Screen_Shot_2014-10-25_at_11.29.15_PM.png"><br> | |||
<p class = "serif" style = "color: #000000; font-size: 25px;"><span class = "mw-headline">References</span></p> | <p class = "serif" style = "color: #000000; font-size: 25px;"><span class = "mw-headline">References</span></p> | ||
<hr> | <hr> | ||
