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Vectors: Difference between revisions
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===Annotation=== | ===Annotation=== | ||
[http://wishart.biology.ualberta.ca/PlasMapper/ PlasMapper]: "automatically generates and annotates plasmid maps using only the plasmid DNA sequence as input. Plasmid sequences up to 20,000 bp may be annotated and displayed. Plasmid figures may be rendered in PNG, JPG, SVG or SVGZ format." It can also output GenBank format. Reference: Xiaoli Dong, Paul Stothard, Ian J. Forsythe, and David S. Wishart "PlasMapper: a web server for drawing and auto-annotating plasmid maps" Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W660-4. | [http://wishart.biology.ualberta.ca/PlasMapper/ PlasMapper]: "automatically generates and annotates plasmid maps using only the plasmid DNA sequence as input. Plasmid sequences up to 20,000 bp may be annotated and displayed. Plasmid figures may be rendered in PNG, JPG, SVG or SVGZ format." It can also output GenBank format. Reference: Xiaoli Dong, Paul Stothard, Ian J. Forsythe, and David S. Wishart "PlasMapper: a web server for drawing and auto-annotating plasmid maps" Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W660-4. | ||
*One drawback to this tool is that although it finds ORFs, it doesn't necessarily identify them. --[[Reshma Shetty | RS]] | *One drawback to this tool is that although it finds ORFs, it doesn't necessarily identify them. --[[Reshma Shetty | RS] | ||
A very nice aspect of PlasMapper is that it identifies features of a sequence and puts them into GenBank format - very handy to prepare sequences for submission to GenBank.] | |||
Also check out [http://www.biology.utah.edu/jorgensen/wayned/ape/ APe], A Plasmid Editor. | Also check out [http://www.biology.utah.edu/jorgensen/wayned/ape/ APe], A Plasmid Editor. | ||
