20.20(S11):Advanced topics: Difference between revisions

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20.20(S11):Advanced topics (view source)

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|--
|--
| '''Tuning the system: Network Composition''' <br>  
| '''Tuning the system: Network Composition''' <br>  
| <font color = blue> Wed Mar 10</font color> <br>after 3 ideas presentations
| <font color = blue> Wed Mar 10</font color> <br>before 3 ideas presentations, meet in 4-163
| Colin, Raven
| Colin, Raven
| '''A modular positive feedback-based gene amplifier''' Nistala GJ et al. ''JBE'' (2010) 4:4<br>[[DOI: 10.1186/1754-1611-4-4]]
| '''A modular positive feedback-based gene amplifier''' Nistala GJ et al. ''JBE'' (2010) 4:4<br>[[DOI: 10.1186/1754-1611-4-4]]
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| '''DNA construction and editing technologies'''<br>  
| '''DNA construction and editing technologies'''<br>  
| Wed Mar 30
| Wed Mar 30
|  
| Raven, Andrew
| '''Programming cells by multiplex genome engineering and accelerated evolution'''<br>Wang HH, et al. ''Nature'' (2009) Aug 13;460(7257):894-8. <br>[[PMID: 19633652 ]]
| '''Programming cells by multiplex genome engineering and accelerated evolution'''<br>Wang HH, et al. ''Nature'' (2009) Aug 13;460(7257):894-8. <br>[[PMID: 19633652 ]]
| '''Single-step assembly of a gene and entire plasmid from large numbers of oligodeoxyribonucleotides'''<br>Stemmer WP, et al. ''Gene'' (1995) 164(1):49-53 <br>[[PMID: 7590320]] <br>
| '''Single-step assembly of a gene and entire plasmid from large numbers of oligodeoxyribonucleotides'''<br>Stemmer WP, et al. ''Gene'' (1995) 164(1):49-53 <br>[[PMID: 7590320]] <br>
|--
|--
| '''Measurement technologies''' <br>
| '''Measurement technologies''' <br>
| <font color = blue> Wed Apr 6 </font color><br> after tech spec review
| <font color = blue> Wed Apr 6 </font color><br> before tech spec review, meet in 4-163
|
| Nick?
| '''Nascent transcript sequencing visualizes transcription at nucleotide resolution'''Churchman LS and Weissman JS.''Nature'' (2011)469:368-373 [[DOI: 10.1038/nature09652]]  
| '''Nascent transcript sequencing visualizes transcription at nucleotide resolution'''Churchman LS and Weissman JS.''Nature'' (2011)469:368-373 [[DOI: 10.1038/nature09652]]  
|'''Measuring the activity of BioBrick promoters using an in vivo reference standard''' <br> Kelly J, et al. ''Journal of Biological Engineering'' (2009) 3:4<br> [[doi:10.1186/1754-1611-3-4]]
|'''Measuring the activity of BioBrick promoters using an in vivo reference standard''' <br> Kelly J, et al. ''Journal of Biological Engineering'' (2009) 3:4<br> [[doi:10.1186/1754-1611-3-4]]
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| '''Chassis''' <br>  
| '''Chassis''' <br>  
| Wed Apr 13  
| Wed Apr 13  
|  
| Jessica, Tina
|'''Study of messenger RNA inactivation and protein degradation in an Escherichia coli cell-free expression system'''<br> Shin J, and Noireaux, V. ''JBE'' (2010) 4:9<br> [[DOI: 10.1186/1754-1611-4-9]]
|'''Study of messenger RNA inactivation and protein degradation in an Escherichia coli cell-free expression system'''<br> Shin J, and Noireaux, V. ''JBE'' (2010) 4:9<br> [[DOI: 10.1186/1754-1611-4-9]]
| '''Emergent properties of reduced-genome Escherichia coli.''' <br> Pósfai G, et al. ''Science.''(2006)312(5776):1044-6.<br> [[PMID: 16645050]]
| '''Emergent properties of reduced-genome Escherichia coli.''' <br> Pósfai G, et al. ''Science.''(2006)312(5776):1044-6.<br> [[PMID: 16645050]]
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| '''Signal Connectivity'''<br>
| '''Signal Connectivity'''<br>
| Wed Apr 20
| Wed Apr 20
|  
| Amber
|'''Rewiring the specificity of two-component signal transduction systems'''<br>Skerker JM, et al. ''Cell'' (2008)133(6):1043-54.<br>[[PMID: 18555780]]
|'''Rewiring the specificity of two-component signal transduction systems'''<br>Skerker JM, et al. ''Cell'' (2008)133(6):1043-54.<br>[[PMID: 18555780]]
|'''Tunable Signal Processing in Synthetic MAP Kinase Cascades''' <br>O'Shaughnessy, EC, et al. ''Cell''(2011) 144:119-131<br>[[DOI: 10.1016/j.cell.2010.12.014]]
|'''Tunable Signal Processing in Synthetic MAP Kinase Cascades''' <br>O'Shaughnessy, EC, et al. ''Cell''(2011) 144:119-131<br>[[DOI: 10.1016/j.cell.2010.12.014]]
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| '''Metabolic Engineering'''  
| '''Metabolic Engineering'''  
| Wed Apr 27
| Wed Apr 27
|
| Yuan
| '''Use of modular, synthetic scaffolds for improved production of glucaric acid in engineered E. coli.'''Moon TS et al. ''Metabolic Engineering'' (2010) 12: 298-305 (2010) [[PMID: 20117231]]
| '''Use of modular, synthetic scaffolds for improved production of glucaric acid in engineered E. coli.'''Moon TS et al. ''Metabolic Engineering'' (2010) 12: 298-305 (2010) [[PMID: 20117231]]
|'''Production of the antimalarial drug precursor artemisinic acid in engineered yeast'''<br>Ro DK, et al. ''Nature'' (2006) 440, 940–943 <br>[[PMID: 16612385]]
|'''Production of the antimalarial drug precursor artemisinic acid in engineered yeast'''<br>Ro DK, et al. ''Nature'' (2006) 440, 940–943 <br>[[PMID: 16612385]]
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|'''Cell Cell Communication/System Ecology'''  
|'''Cell Cell Communication/System Ecology'''  
| Wed May 4  
| Wed May 4  
|  
| Colin
|'''Robust multicellular computing using genetically encoded NOT gates and chemical 'wires''''<br>Tamsir, a., Tabor, J.J., Voigt, C.A. ''Nature'' 2011 Jan 13;469:212-215.<br>[[DOI: 10.1038/nature09565]]
|'''Robust multicellular computing using genetically encoded NOT gates and chemical 'wires''''<br>Tamsir, a., Tabor, J.J., Voigt, C.A. ''Nature'' 2011 Jan 13;469:212-215.<br>[[DOI: 10.1038/nature09565]]
| ''' Division of logic labour''' <br> Li B and You L.''Nature'' (2011) 469:171-172<br>[[DOI:10.1038/469171a]]
| ''' Division of logic labour''' <br> Li B and You L.''Nature'' (2011) 469:171-172<br>[[DOI:10.1038/469171a]]
|--
|--
| '''Property rights in synthetic biology'''  
| '''Property rights in synthetic biology'''  
|  <font color = blue> Wed May 11 </font color><br> after final presentations  
|  <font color = blue> Wed May 11 </font color><br> before final presentations, meet in 4-163
|
| Pei
|''' Synthetic biology: caught between property rights, the public domain, and the commons''' <br>Rai A, Boyle ''J. PLoS Biol.'' (2007)5(3):e58<br>[[PMID: 17355173]] <br>
|''' Synthetic biology: caught between property rights, the public domain, and the commons''' <br>Rai A, Boyle ''J. PLoS Biol.'' (2007)5(3):e58<br>[[PMID: 17355173]] <br>
|'''Patents and Translational Research in Genomics'''<br>Kaye J, Hawkins N, and Taylor J. ''Nature Biotech'' (2007) 25(7): 739–741.[[doi: 10.1038/nbt0707-739.]]
|'''Patents and Translational Research in Genomics'''<br>Kaye J, Hawkins N, and Taylor J. ''Nature Biotech'' (2007) 25(7): 739–741.[[doi: 10.1038/nbt0707-739.]]
|--
|--
|'''Safety!'''  
|'''Safety!'''  
| <font color = blue> Wed May 11 </font color> <br> after final presentations
| <font color = blue> Wed May 11 </font color> <br> before final presentations, meet in 4-163
|  
| Patrick
| '''Managing the unimaginable. Regulatory responses to the challenges posed by synthetic biology and synthetic genomics.''' <br>Samuel GN, Selgelid MJ, Kerridge I. ''EMBO reports'' (2009) 10(1):7-11.<br>[[DOI: 10.1038/embor.2008.232]]<br>
| '''Managing the unimaginable. Regulatory responses to the challenges posed by synthetic biology and synthetic genomics.''' <br>Samuel GN, Selgelid MJ, Kerridge I. ''EMBO reports'' (2009) 10(1):7-11.<br>[[DOI: 10.1038/embor.2008.232]]<br>
|'''Darwin’s Surprise: Why are evolutionary biologists bringing back extinct deadly viruses?''' <br>Michael Specter [http://www.newyorker.com/reporting/2007/12/03/071203fa_fact_specter New Yorker article]
|'''Darwin’s Surprise: Why are evolutionary biologists bringing back extinct deadly viruses?''' <br>Michael Specter [http://www.newyorker.com/reporting/2007/12/03/071203fa_fact_specter New Yorker article]
|}
|}
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