20.20(S11):Advanced topics: Difference between revisions

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20.20(S11):Advanced topics (view source)

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|'''Study of messenger RNA inactivation and protein degradation in an Escherichia coli cell-free expression system'''<br> Shin J, and Noireaux, V. ''JBE'' (2010) 4:9<br> [[DOI: 10.1186/1754-1611-4-9]]
|'''Study of messenger RNA inactivation and protein degradation in an Escherichia coli cell-free expression system'''<br> Shin J, and Noireaux, V. ''JBE'' (2010) 4:9<br> [[DOI: 10.1186/1754-1611-4-9]]
| ''''''Humphris, EL; Kortemme, T. ''PLoS computational biology'' (2007) 3(8):e164<br>[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.0030164 link]<br>'''Design principles for ligand-sensing, conformation-switching ribozymes.'''Chen X and Ellington AD. ''PLoS Comput Biol.'' (2009) Dec;5(12):e1000620. [[PMID: ]]
| '''Emergent properties of reduced-genome Escherichia coli.''' <br> Pósfai G, et al. ''Science.''(2006)312(5776):1044-6.<br> [[PMID: 16645050]]
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| '''Signal Connectivity'''<br>
| '''Signal Connectivity'''<br>
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| '''Metabolic Engineering'''  
| '''Metabolic Engineering'''  
| Wed Apr 27
| Wed Apr 27
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|'''Article 1:<br> Production of the antimalarial drug precursor artemisinic acid in engineered yeast'''<br>Ro DK, et al. ''Nature'' (2006) 440, 940–943 <br>[[PMID: 16612385]]<br> '''Article 2: <br>Synthesis of methyl halides from biomass using engineered microbes''' <br> Bayer TS, et al. ''J Am Chem Soc'' (2009) 131:6508-6515.<br>[[PMID: 19378995]]
| '''Use of modular, synthetic scaffolds for improved production of glucaric acid in engineered E. coli.'''Moon TS et al. ''Metabolic Engineering'' (2010) 12: 298-305 (2010) [[doi:10.1016/j.ymben.2010.01.003.]]
| '''Synthetic protein scaffolds provide modular control over metabolic flux.'''<br> Dueber JE et al. ''Nat Biotechnol.'' (2009) 27(8):753-9. [[PMID: 19648908]]
|'''Production of the antimalarial drug precursor artemisinic acid in engineered yeast'''<br>Ro DK, et al. ''Nature'' (2006) 440, 940–943 <br>[[PMID: 16612385]]
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|'''Cell Cell Communication/System Ecology'''  
|'''Cell Cell Communication/System Ecology'''  
| Wed May 4  
| Wed May 4  
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|'''Article 1: <br>A synthetic Escherichia coli predator-prey ecosystem'''<br> Balagaddé FK, et al. ''Mol Syst Biol.'' 2008;4:187. <br>[[PMID: 18414488]]<br> '''Article 2:<br>Synthetic cooperation in engineered yeast populations'''<br> Shou W, Ram S, Vilar JM. ''Proc Natl Acad Sci U S A.'' (2007) 104(6):1877-82. <br>[[PMID: 17267602]]
|'''Robust multicellular computing using genetically encoded NOT gates and chemical 'wires''''<br>Tamsir, a., Tabor, J.J., Voigt, C.A. ''Nature'' 2011 Jan 13;469:212-215.<br>[[DOI: 10.1038/nature09565]]
| ''' Synthetic ecosystems based on airborne inter- and intrakingdom communication''' <br> Weber, W., Daoud-El Baba, M. & Fussenegger, M. ''Proc. Natl Acad. Sci. USA'' (2007) 104, 10435–10440 <br>[[PMID: 17551014]]
| ''' Division of logic labour''' <br> Li B and You L.''Nature'' (2011) 469:171-172<br>[[DOI:10.1038/469171a]]
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| '''Property rights in synthetic biology'''  
| '''Property rights in synthetic biology'''  
|  <font color = blue> Tue May 10? </font color>  
|  <font color = blue> Tue May 10? </font color>  
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|''' Article 1: <br>Synthetic biology: caught between property rights, the public domain, and the commons''' <br>Rai A, Boyle ''J. PLoS Biol.'' (2007)5(3):e58<br>[[PMID: 17355173]] <br>
|''' Synthetic biology: caught between property rights, the public domain, and the commons''' <br>Rai A, Boyle ''J. PLoS Biol.'' (2007)5(3):e58<br>[[PMID: 17355173]] <br>
|'''Article 2: <br>Patents and Translational Research in Genomics'''<br>Kaye J, Hawkins N, and Taylor J. ''Nature Biotech'' (2007) 25(7): 739–741.[[doi: 10.1038/nbt0707-739.]]
|'''Patents and Translational Research in Genomics'''<br>Kaye J, Hawkins N, and Taylor J. ''Nature Biotech'' (2007) 25(7): 739–741.[[doi: 10.1038/nbt0707-739.]]
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|'''Safety!'''  
|'''Safety!'''  
| <font color = blue> Tue May 10? </font color>  
| <font color = blue> Tue May 10? </font color>  
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| '''Article 1:<br> Managing the unimaginable. Regulatory responses to the challenges posed by synthetic biology and synthetic genomics.''' <br>Samuel GN, Selgelid MJ, Kerridge I. ''EMBO reports'' (2009) 10(1):7-11.<br>[[DOI: 10.1038/embor.2008.232]]<br>
| '''Managing the unimaginable. Regulatory responses to the challenges posed by synthetic biology and synthetic genomics.''' <br>Samuel GN, Selgelid MJ, Kerridge I. ''EMBO reports'' (2009) 10(1):7-11.<br>[[DOI: 10.1038/embor.2008.232]]<br>
|'''Article 2: <br>Darwin’s Surprise: Why are evolutionary biologists bringing back extinct deadly viruses?''' <br>Michael Specter [http://www.newyorker.com/reporting/2007/12/03/071203fa_fact_specter New Yorker article]
|'''Darwin’s Surprise: Why are evolutionary biologists bringing back extinct deadly viruses?''' <br>Michael Specter [http://www.newyorker.com/reporting/2007/12/03/071203fa_fact_specter New Yorker article]
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|'''Molecular and Cellular Computing'''
| <font color = blue> Tue May 10? </font color>
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|'''Robust multicellular computing using genetically encoded NOT gates and chemical 'wires''''<br>Tamsir, a., Tabor, J.J., Voigt, C.A. ''Nature'' 2011 Jan 13;469:212-215.<br>[[DOI: 10.1038/nature09565]]
|'''Engineering bacteria to solve the Burnt Pancake Problem''' <br>Haynes KA, et al. ''J Biol Eng.'' 2008 May 20;2:8.<br>[[PMID: 18492232]]
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